PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02671.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 505aa    MW: 54144.9 Da    PI: 7.2069
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02671.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.4e-1387125241
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                              +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  Rsa1.0_02671.1_g00002.1  87 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCCNNVD 125
                              689*************************.********986 PP
2TCR51.32.3e-16171210140
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  Rsa1.0_02671.1_g00002.1 171 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 210
                              589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1386126IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.61887211IPR005172CRC domain
PfamPF036381.3E-988123IPR005172CRC domain
SMARTSM011147.8E-20171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-13174209IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGEGDELPPK MEVSEELDAP TKKTARQLDF AGGSVEVNQA HATSISATVA TPTQHLQSQG  60
PIRLPKPESP KPKPRPLVEA GDGTPLKKKH CNCKHSRCLK LYCECFASGT YCDGCNCLNC  120
CNNVDNEPAR REAIESTLER NPNAFRPKIA SSPHDARDNK EVVGGVVMLG KHHKGCHCKK  180
SGCLKKYCEC FQANILCSDN CRCLGCKNFE GSEDRLALFH GEHSHGAAYL QHANAAITGA  240
VGSSGFASSP APKRRKAQDI FFNQGAKDSS INRLGQGSSG KTTSSKPVSG RGGPSKVVYR  300
SLLADIIQPQ DVKALCSVLV AVSEVAAKTS TEKRLEDQSE TSLASSAQDN NNGAEIEKAV  360
SGNEPGAEES SSDGSKGKSL SPETLALMCD EQDTMLMVAA SSNCSVEPPK GQELVYAEQE  420
KIVLTKFRDC LNRIISYAEL KESKYSLSRM DIESPIHAAV KVEPVVEQGA VANGVSQTTI  480
QQPSQLTSSY TQTQQPQALS EKKDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-298822011132Protein lin-54 homolog
5fd3_B3e-298822011132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02671.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438194.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A3N6S0N40.0A0A3N6S0N4_BRACR; Uncharacterized protein
STRINGBo7g003920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein