PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02651.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 1104aa    MW: 120169 Da    PI: 8.1282
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02651.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.98.7e-08300318119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C+++CH GpC+pC+
  Rsa1.0_02651.1_g00003.1 300 CGRHRCERTCHVGPCDPCQ 318
                              ******************6 PP
2zf-NF-X118.15.9e-06364381118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG+H C++ CH+GpC+ C
  Rsa1.0_02651.1_g00003.1 364 CGNHFCSEVCHPGPCGDC 381
                              ****************99 PP
3zf-NF-X122.91.9e-07423440118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG H+C++ CH G+C pC
  Rsa1.0_02651.1_g00003.1 423 CGLHTCNEVCHSGDCSPC 440
                              ****************** PP
4zf-NF-X116.42.1e-05521539119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C++ CH G CppC 
  Rsa1.0_02651.1_g00003.1 521 CGQHSCESSCHSGHCPPCL 539
                              ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.66E-5121191No hitNo description
PROSITE profilePS500168.911129190IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590132187IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465132188IPR001841Zinc finger, RING-type
CDDcd060082.79E-5221283No hitNo description
SMARTSM004380.023245263IPR000967Zinc finger, NF-X1-type
PfamPF014228.3247262IPR000967Zinc finger, NF-X1-type
CDDcd060082.35E-12290338No hitNo description
SMARTSM004384.0E-5300319IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-6300317IPR000967Zinc finger, NF-X1-type
CDDcd060081.97E-8358399No hitNo description
SMARTSM004382.6E-5364383IPR000967Zinc finger, NF-X1-type
PfamPF014227.1E-5364381IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-13413460No hitNo description
SMARTSM004383.0E-5423442IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-6423440IPR000967Zinc finger, NF-X1-type
SMARTSM00438110482513IPR000967Zinc finger, NF-X1-type
PfamPF0142218482493IPR000967Zinc finger, NF-X1-type
CDDcd060081.66E-9511563No hitNo description
SMARTSM004380.0011521540IPR000967Zinc finger, NF-X1-type
PfamPF014229.6E-4521538IPR000967Zinc finger, NF-X1-type
CDDcd060081.61E-6568615No hitNo description
SMARTSM004380.079578596IPR000967Zinc finger, NF-X1-type
PfamPF0142223578595IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012631661IPR000967Zinc finger, NF-X1-type
PfamPF014220.027631646IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4670691IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.5E-4922967IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MSSQVRRDRP RSNPHQTWVP RGAASSAVVN ESSLPPVNTD SAAAAASRPL RQHRPSYNHH  60
QRSNNIARPP PPNRQRRNNA PGILPDNRHR VASRTQGKKV VKEENTVLTT DPNLPQLVQE  120
LQDKLVKSSI ECMICYDMVG RSANIWSCSS CYSIFHMHCI KKWARAPTSV DLLAEKNQGD  180
NWRCPGCQSV QLTSSREICY RCFCGKRKDP PSDPYLTPHS CGEPCGKPLE REFSAAAETS  240
EEDRCPHVCV LQCHPGPCPP CKAFAPPRSC PCGKKMVHTR CSERRSVLVC GQRCEKLLNC  300
GRHRCERTCH VGPCDPCQVP VNAACFCKKK AETVICGEMN VKGELKADDG VYSCNFNCGK  360
PLGCGNHFCS EVCHPGPCGD CDLLPSRVKT CYCGKTRLEE ESRRSCLDPI PSCSKTCRKL  420
LPCGLHTCNE VCHSGDCSPC LVKVNQKCRC GSTSRTVECY FTTSSETEKF VCAKPCGRKK  480
NCGRHRCSER CCPLLNSKKN DLSGDWDPHA CQLPCGKNLR CGQHSCESSC HSGHCPPCLE  540
MIFTDLTCAC GRTSVPPPLP CGTPVPSCQL PCSIPQPCGH SATHGCHFGD CPPCSAPVEK  600
KCVGGHVVLR NIPCGLKDIR CNKICGKTRR CGLHACARTC HPEPCDSYSE SEAVLRVTCG  660
QTCGAPRRDC RHVCAAFCHP SLPCPDSRCE FPVTITCLCG RITATVPCDA GGDSASNLGV  720
VSVSETSVLQ KLPTPLQPVD TSGNRVPLGQ RKLSCDDECA KQERKRVLQD AFDITPPNLD  780
SLHFSENSAM TEIISDIYRR DPKWVLAVEE RFKFLVLGKA KGSTSALKVH VFCPMQKDKL  840
DTVRLLAERW KLAVSNGGWE PKKFIVVHVT QKSKPPTRII GARGGAISVG GPHPPSFDPL  900
VDMDPRLVVS LLDLPREANV SAVVLRFGGE CELVWLNDKN ALAVFHDPAR AATAMRRLDH  960
GSVYSGAVVV QNAAQSQSLG NAWGKLPSSS SWDVQKANPW KKAVIEESDE SWGAEDSPIG  1020
GSSTDIQASA WRSATSNAPI VTSANRWSVL EPEKPKTFAL EPLVQSGGSS SSEAAGKQVV  1080
EGSGKQLVGA SGEEVVDDWE KVCE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02651.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441046.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3P6GFB00.0A0A3P6GFB0_BRAOL; Uncharacterized protein
STRINGBo8g059130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1