PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02649.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 183aa    MW: 19751.2 Da    PI: 4.4399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02649.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-171564355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             ykGVr++k++ +Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  Rsa1.0_02649.1_g00002.1 15 YKGVRQRKNSDKWVSEIREP-----RtpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                             9******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-201474IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-271474IPR001471AP2/ERF domain
PROSITE profilePS5103221.0351472IPR001471AP2/ERF domain
SMARTSM003801.1E-301478IPR001471AP2/ERF domain
CDDcd000181.40E-281574No hitNo description
PfamPF008474.6E-111564IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MPGTSKENGG RHQLYKGVRQ RKNSDKWVSE IREPRTPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTVLN FPNSASSFPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNNSAASSDV  120
MMMNGSYENT YGFIDEDLIF DMPNMIMNMA EGMLLSPPRQ PTFDAASDAY GYTGADDYLW  180
NFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02649.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475280.11e-133PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-86ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3P6ANS41e-109A0A3P6ANS4_BRAOL; Uncharacterized protein
STRINGBo3g030140.11e-109(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-78ERF family protein