PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02621.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26926.8 Da PI: 5.5039 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 132 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Rsa1.0_02621.1_g00010.1 132 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAAFAYDRAAFRMRG 182 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.60E-32 | 131 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 131 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-40 | 132 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.171 | 132 | 190 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 132 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-23 | 132 | 192 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMYRQTEAES DYALLESIRR HLLGGEAELR FTESTPSSCF TESWGDLPLQ ENDSEDMLVY 60 GLLNDAFNGA YDTSSPSSDL SCITDLLDLE PSSKRQTNPS QSDSPVVKAE PSESFAAAEA 120 EKPKAATAKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTFETAEDAA FAYDRAAFRM 180 RGSRALLNFP LRVNSGEPDP VRITSKRSYT SSSSSSSSEN GKLKRRRKTE NGQSEFQVKC 240 EVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-45 | 128 | 197 | 1 | 70 | ATERF1 |
3gcc_A | 9e-45 | 128 | 197 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02621.1_g00010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ788942 | 0.0 | FJ788942.1 Brassica carinata ERF2 transcription factor (ERF2.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434144.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Refseq | XP_018466514.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 1e-109 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | D1GC12 | 1e-157 | D1GC12_BRACI; ERF2 transcription factor (Fragment) | ||||
STRING | Bo2g132270.1 | 1e-143 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 8e-90 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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