PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02599.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 278aa MW: 32058.3 Da PI: 8.9185 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.2 | 8e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+ n qvtfskRr g++KKA+EL++LC+ae+ vi+fs+ k++ + Rsa1.0_02599.1_g00003.1 17 KNENNLQVTFSKRRSGLFKKASELCTLCGAEIVVIVFSPGKKVFSF 62 8999***********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.899 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-27 | 7 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.62E-33 | 7 | 78 | No hit | No description |
PRINTS | PR00404 | 7.3E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MVRKSKGRQK IEMVKMKNEN NLQVTFSKRR SGLFKKASEL CTLCGAEIVV IVFSPGKKVF 60 SFGHPNVDCV IDRFVNINPP HPREHTDMQL SEAHRNAIVR DLNNHLTQVT EEFEIEKKRN 120 EELKKKRKNR RMPENWWEEP IENLTLSQLT EFKCGLKNLR KTVTAEASKN LQAIVPRHTF 180 YAGSSNNAAF GICDDKGNTH TDLDVYNHQR MVAANTFACN HHNVIVPHHI TTPFGNSITE 240 GFAPEYNQNQ NQLCFKQEHI SECDHHSNHP PRFGHGYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-16 | 7 | 88 | 2 | 84 | MEF2 CHIMERA |
6byy_B | 2e-16 | 7 | 88 | 2 | 84 | MEF2 CHIMERA |
6byy_C | 2e-16 | 7 | 88 | 2 | 84 | MEF2 CHIMERA |
6byy_D | 2e-16 | 7 | 88 | 2 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02599.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639809.1 | 1e-179 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-111 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A078GJ53 | 1e-179 | A0A078GJ53_BRANA; BnaC05g33070D protein | ||||
STRING | Bo5g113750.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-104 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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