PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02586.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 440aa MW: 49403.7 Da PI: 8.1521 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.3 | 4.5e-51 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G+rF+Ptdeelv++yL++k++g++ ++ ++i+e+di+k+ePwdLp +++k++++ew fF++ d+k+++g+r+nr+t +g Wk Rsa1.0_02586.1_g00002.1 14 LPVGLRFRPTDEELVSYYLRRKIKGHDDDV-KAIREIDICKCEPWDLPdfSAIKTKDSEWLFFCPLDRKHPNGSRQNRSTLAGHWK 98 799************************999.89**************96448899999**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++++s k++++g+k+tLvf++grapkg++t+Wvmheyr+ Rsa1.0_02586.1_g00002.1 99 ATGKDRKIKSGKNKVIGVKRTLVFHSGRAPKGTRTNWVMHEYRA 142 **********99******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-56 | 11 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.579 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-25 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MNQNSIKELT VDSLPVGLRF RPTDEELVSY YLRRKIKGHD DDVKAIREID ICKCEPWDLP 60 DFSAIKTKDS EWLFFCPLDR KHPNGSRQNR STLAGHWKAT GKDRKIKSGK NKVIGVKRTL 120 VFHSGRAPKG TRTNWVMHEY RATEHDLCGT NPGQSPFVIC KLFKKQDPSL VEEEAVSSPT 180 SSLDKTKSEV SMVAVKPESS LVISGDSRNG GACNVATTSK LGDLDWLSFP ELESMTVFSP 240 LHSQVQSEFG SSFNAFLQPS SSDFSGNHNN NNFQIQTQYG TNDEEDTDVS RFLNSVLDFQ 300 DDQDFVFPCE FDGAVPDQIA PAYQQQRSSG DMSDDVSRTG IKLQPRREQP SGFTTDYVIH 360 GNASRRLRLQ TIKREVEDTD GEAIKKGKLM RSKSRTRFLF KKIMPVRCSY GGLLRAAVVA 420 VLFLISVCSL TTDFRASLMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 9 | 166 | 15 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02586.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641355 | 0.0 | KP641355.1 Brassica napus NAC transcription factor 62-3.1 (NAC62-3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432767.1 | 0.0 | PREDICTED: NAC domain-containing protein 62-like | ||||
Swissprot | Q9SCK6 | 0.0 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | A0A109P4Q3 | 0.0 | A0A109P4Q3_BRANA; NAC transcription factor 62-2.1 | ||||
STRING | Bra019599.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 0.0 | NAC domain containing protein 62 |
Publications ? help Back to Top | |||
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