PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02570.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 204aa MW: 23398.5 Da PI: 8.1252 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.3 | 5.2e-26 | 77 | 127 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fve+v++L +AtPk+il+lm +gLt+++vkSHLQkYR+ Rsa1.0_02570.1_g00006.1 77 KTRIKWTADLHDKFVECVNNL----EATPKQILKLMRTDGLTIYQVKSHLQKYRT 127 68*******************....9****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.877 | 74 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-15 | 76 | 127 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-19 | 77 | 128 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 77 | 128 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-9 | 81 | 126 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MKFGRRYASD DALSHEMCSE HASNCCKCYD ISEIFSTETR QATSLSKQSS ECVETDISTE 60 PSKSSLASEF TSSSLIKTRI KWTADLHDKF VECVNNLEAT PKQILKLMRT DGLTIYQVKS 120 HLQKYRTQKH VQNSIQETSF KGQEADMEGS GIKEFMRLQD KVGKHLQEQL EIQRGLYLLV 180 EKQNKKTPRD DYISKTKELV NTVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 77 | 130 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02570.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444686.1 | 1e-149 | PREDICTED: myb family transcription factor PHL5-like isoform X3 | ||||
Swissprot | Q0WVU3 | 4e-31 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A397XQ85 | 1e-106 | A0A397XQ85_BRACM; Uncharacterized protein | ||||
STRING | Bra009230.1-P | 1e-62 | (Brassica rapa) | ||||
STRING | Bostr.10199s0037.1.p | 6e-68 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19527 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 5e-32 | G2-like family protein |