PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02570.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 227aa MW: 25190.9 Da PI: 6.2171 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.8 | 7.3e-11 | 190 | 214 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt++LH++Fve+v+ LGG++ Rsa1.0_02570.1_g00004.1 190 KTRIRWTQDLHDKFVECVNLLGGAD 214 68*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 189 | 223 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDNINYETSN ASQGSRLQLP PHPQPPQPFN LQDVNMIHYS QSPPLTIETF SGLTPYDDTE 60 NQPFSVQCSS SKPYLPLFHP CHHQASGSLS LDQSQSMVPM QHLEDQYLKP LYQRSCANDL 120 AATNASSASY SLSFEASQDP QELCRRTYSN SNVTQLNFTS SILPRFSSHS SFSTHGGSMA 180 SNSGAVIGNK TRIRWTQDLH DKFVECVNLL GGADSKLEAL KILQLYN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02570.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013715394.1 | 1e-114 | myb family transcription factor PHL5-like | ||||
Refseq | XP_018510816.1 | 1e-114 | PREDICTED: myb family transcription factor PHL5-like | ||||
Swissprot | Q0WVU3 | 1e-93 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | M4CYD1 | 1e-112 | M4CYD1_BRARP; Uncharacterized protein | ||||
STRING | Bra009228.1-P | 1e-113 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-75 | G2-like family protein |