PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02556.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 50067.1 Da PI: 7.351 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.5e-19 | 219 | 265 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+++G + W+ Ia+ ++ gR +kqc++rw+++l Rsa1.0_02556.1_g00005.1 219 KGQWTAEEDRILVQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 265 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 271 | 313 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ Rsa1.0_02556.1_g00005.1 271 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 313 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.918 | 214 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-32 | 217 | 312 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-18 | 218 | 267 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 220 | 270 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-16 | 222 | 265 | No hit | No description |
Pfam | PF13921 | 4.8E-20 | 222 | 279 | No hit | No description |
PROSITE profile | PS51294 | 21.16 | 270 | 320 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-16 | 270 | 318 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 271 | 318 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-12 | 273 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MENYVDESGF APLNQTNFIH DQEHMKEEDF SFEVVDQSKP TSFLQDFHHL DHDHQFDHHY 60 HHHYHHHHGS TSSNPLLGIP KTLSCINNAP SEHCSYQENM VDSYESKPRL MNHHFQGSDN 120 QYFIRNHHQE ISLVDGHNPV DLEQNNMIMM RMLPFEYPPT EIIKPTNFMM PNEVSCVSAD 180 DNFYKAMSFN KTKHFLTRNL SSSSSSSSWK GKNKTTLVKG QWTAEEDRIL VQLVEKYGLR 240 KWSHIAQVLP GRIGKQCRER WHNHLKPDIK KETWSEEEDR VLIEFHKEIG NKWAEIAKRL 300 PGRTENSIKN HWNATKRRQF SKRKCRSKYP RPSLLQGYIK SLDLGVLSSS SVPARGRRKE 360 SNKKYVVAVE EKKKKKEEKF YGQDRIVPEF VFADGFGFNE NLFEEGCSID SLLDDLPQTD 420 IDAFVHGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-45 | 217 | 320 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-45 | 217 | 320 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 356 | 375 | RRKESNKKYVVAVEEKKKKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02556.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013654780.1 | 0.0 | transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 0.0 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A3P6BR72 | 0.0 | A0A3P6BR72_BRACM; Uncharacterized protein | ||||
STRING | Bo3g157300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5869 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 0.0 | myb domain protein 98 |
Publications ? help Back to Top | |||
---|---|---|---|
|