PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02554.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 82aa MW: 9158.54 Da PI: 11.3791 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.2 | 1.8e-07 | 9 | 37 | 1 | 29 |
S---SHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv 29 k+ie qv f++Rr+ ++KKA+ LS+ Rsa1.0_02554.1_g00004.1 9 KKIEKANSLQVRFTNRRKVLMKKANHLSI 37 678899999*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-4 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-9 | 1 | 37 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.451 | 1 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-6 | 10 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MGRGKIELKK IEKANSLQVR FTNRRKVLMK KANHLSISAT RTSPLSSSST PARYGYSAAD 60 HRLREQQQLL LCSSSQENGV VV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02554.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437123.1 | 2e-21 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
Refseq | XP_018444266.1 | 1e-21 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A397YLY0 | 2e-17 | A0A397YLY0_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6BJZ3 | 2e-17 | A0A3P6BJZ3_BRACM; Uncharacterized protein | ||||
STRING | Bo6g072840.1 | 6e-18 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-08 | AGAMOUS-like 15 |