PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02553.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 26083.1 Da    PI: 8.6768
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02553.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.1e-184483847
                             HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                   SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                             nrqvtf+kRrng++ KA   S+LC   vav+i+sstgk+y
  Rsa1.0_02553.1_g00002.1 44 NRQVTFCKRRNGLMEKARQFSILCRSSVAVLIVSSTGKFY 83
                             9**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004043.3E-93151IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-123488IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-154487IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.8994484IPR002100Transcription factor, MADS-box
PfamPF003197.1E-174484IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-95166IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-96687IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.80.10.103.3E-15121180IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520583.87E-14123181IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138554.9E-7130179IPR001611Leucine-rich repeat
PRINTSPR000191.2E-5131144No hitNo description
PRINTSPR000191.2E-5152165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MFQEPRDSGG HDLDSSFHWY QFRFLDVLLG FEIGSRDSLV MVFNRQVTFC KRRNGLMEKA  60
RQFSILCRSS VAVLIVSSTG KFYSSYCEVT DFMKEEKKRK QREAVAEDLS ERAFQSGSPE  120
SREGICEMKN MQELDLSRNK LVGQFPLCLT GLTGLRVLDL SSNQLNGKLP STLGNLGSLS  180
CFFQLLKTRQ FGYGELVLMS VFMSFIITTT VRCFRGQVVV TSQNYFLVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02553.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2890823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.17e-18MIKC_MADS family protein