PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02541.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 42646.1 Da PI: 4.9921 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.3 | 1.1e-30 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+Ptde+++ e+L++k+ + e v ++v+i++++P++Lp ++++ + +fF+++ ++y tg+rk+ Rsa1.0_02541.1_g00005.1 55 LPKGVKFEPTDENII-EFLEAKCGVGAskphvlI---EefirpVTEDVGINYTHPENLP-GANKDGVSAFFFHTTVQAYGTGQRKR 135 799************.9*****876664555552...13444467889***********.445566789***************** PP NAM 76 ra.......tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 r+ + +W++tgk+k+vl +g + g+kk++v+yk + +k+ekt+Wv+h+y+l Rsa1.0_02541.1_g00005.1 136 RKitptclnEEPVRWHKTGKTKHVLL-NGVQRGCKKIMVLYKSalNGSKPEKTNWVLHQYHL 196 *7556555444788************.99************6434667777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-34 | 42 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.545 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-13 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MASAWIVDGP GMASKVKNAS LSSPLQTRDS GACIQCPNCC FRIDNSNVLV PLPGLPKGVK 60 FEPTDENIIE FLEAKCGVGA SKPHVLIEEF IRPVTEDVGI NYTHPENLPG ANKDGVSAFF 120 FHTTVQAYGT GQRKRRKITP TCLNEEPVRW HKTGKTKHVL LNGVQRGCKK IMVLYKSALN 180 GSKPEKTNWV LHQYHLGTEG NERGEYVVSK ITYQKEKVKD EGESSSGVRG GPTTPMTNTP 240 TPPRPLDGGV PGDEKAFDDD KMFDPFYEGL DSIPEAALWS KKARREEDVA GVKVSEDNLT 300 CNESIEASSA WENQLLPNPS LGELDGFALS DLENADLGTP PDFLTVRSKL NHFVEEGSLN 360 LDADMDIIGG GWVLQLASQD SLMNWMGWL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02541.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 1e-55 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-55 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490993.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 3e-66 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A398A719 | 0.0 | A0A398A719_BRACM; Uncharacterized protein | ||||
STRING | Bra001000.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo3g055070.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |