PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02506.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 493aa MW: 53254.3 Da PI: 6.128

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02506.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	315	363	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Rsa1.0_02506.1_g00007.1 315 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 363 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-17	310	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.77E-11	310	367	No hit	No description
PROSITE profile	PS50888	15.478	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-17	313	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	315	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	318	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MDVSEKDELR NGDTTANYDD ESANNNNPPP DWRVSGSNQV SAPNDSYPPE NQMMDSFGQT 60 LWYDPTNVQA VGYGGFNGVN NASSSSSSFR GNNNMDRSLE MGWNLLPPKG NGMFLPNASS 120 FLPPPSMAQF PADSGFIERA ARFSLFSGGS FSDMMNHHHQ QQQQQQPLGN PTESIGLFLP 180 SNVGVAHNDA SAAMKESNVV RSSEQGNKQN VPGSGNVSED TQSSGGGGGN GQKGGEASSK 240 GFDSKKRKRN RQSSEAGQSH RSQQSEEEAD NNGDKKRNDE QSPKSQGNKT NSGKQTSDPK 300 DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ 360 SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGTS SATPFPQNMP MVYPPLPHGF 420 MQQTLSSMGR NISSPLSPIN GGYKRQEANG WEGDLQNVIQ INYGAGDVPP DSQAAAAAAT 480 AASLPSSNMK VEP

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MDVSEKDELR NGDTTANYDD ESANNNNPPP DWRVSGSNQV SAPNDSYPPE NQMMDSFGQT  60
LWYDPTNVQA VGYGGFNGVN NASSSSSSFR GNNNMDRSLE MGWNLLPPKG NGMFLPNASS  120
FLPPPSMAQF PADSGFIERA ARFSLFSGGS FSDMMNHHHQ QQQQQQPLGN PTESIGLFLP  180
SNVGVAHNDA SAAMKESNVV RSSEQGNKQN VPGSGNVSED TQSSGGGGGN GQKGGEASSK  240
GFDSKKRKRN RQSSEAGQSH RSQQSEEEAD NNGDKKRNDE QSPKSQGNKT NSGKQTSDPK  300
DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ  360
SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGTS SATPFPQNMP MVYPPLPHGF  420
MQQTLSSMGR NISSPLSPIN GGYKRQEANG WEGDLQNVIQ INYGAGDVPP DSQAAAAAAT  480
AASLPSSNMK VEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02506.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451960.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X3
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3N6Q7W7	0.0	A0A3N6Q7W7_BRACR; Uncharacterized protein
STRING	Bra004348.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]