PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02506.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 36781.3 Da    PI: 5.9341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02506.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-055271221
                             HHHHHHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafe 21
                             r +h+  E+rRR++iN++f 
  Rsa1.0_02506.1_g00002.1 52 RSKHSVTEQRRRSKINERFC 71
                             899***************96 PP
2HLH18.14.7e-06881192055
                              HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              f+ Lre++P++     +K + a+ L ++++Y+++Lq
  Rsa1.0_02506.1_g00002.1  88 FQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 119
                              99********8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-1849141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.65550118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.74E-1151143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-1052123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRAGKANQEE DDYGEEDFVS KREGPSSNNH NSNSAAAASR DAKENDKASA IRSKHSVTEQ  60
RRRSKINERF CQEDRRTQCF RNSALPQFQI LREIIPNSEQ KRDTASFLLE VIDYVQYLQE  120
KVQKYEGSYP GWSQEPTKLT PWRNNHWRVQ SLANPPVAAA SNGSVPVIPY PGKFEENTVP  180
SSAPAIVAEM QNPVDSDLGR VYKPIDSQHE LDHDDDKELP PVQPINHPTF VHGEQGDGAG  240
QSNNDLVIEG GTISISTAYS HELLSSLTQA LQNAGVDLSH AKLSVQIDLG KRANQGLTHN  300
DPSNKIPLSS DTEGSTPSRG ESEHAHKRVK TL
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02506.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456859.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-148BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D3CZ531e-179A0A0D3CZ53_BRAOL; Uncharacterized protein
STRINGBo6g108530.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-146BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]