PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02496.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 232aa    MW: 26853.4 Da    PI: 6.8648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02496.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-131461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Rsa1.0_02496.1_g00006.1 14 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYL 61
                             89******************************99************97 PP
2Myb_DNA-binding53.94.1e-1767110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg +T  E+e++ +++ qlG++ W++Ia+++  gRt++++k++w++
  Rsa1.0_02496.1_g00006.1  67 RGGFTDAEEERIMELHSQLGNR-WSKIASHFS-GRTDNEIKNHWNT 110
                              788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.605961IPR017930Myb domain
SuperFamilySSF466891.35E-2711108IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002492.6E-111461IPR001005SANT/Myb domain
CDDcd001677.22E-41661No hitNo description
PROSITE profilePS5129425.59862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.0E-1467110IPR001005SANT/Myb domain
CDDcd001671.67E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRIV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TDAEEERIME LHSQLGNRWS KIASHFSGRT DNEIKNHWNT KIKKKMKHLG  120
LDPATHEPMN NITYQTESNQ ITKPNICSIT KEGEENKEQT LKDEVDIGSL FEMQGNEISI  180
SSSSLYSNIS RSESSSNFAE TSISLEQWDL TYMTDPLVPW DFFTNLDDNI FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02496.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196221e-169AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473706.11e-173PREDICTED: myb-related protein 315-like
RefseqXP_018473707.11e-173PREDICTED: myb-related protein 315-like
SwissprotQ9C7U79e-71MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0D3B1401e-150A0A0D3B140_BRAOL; Uncharacterized protein
STRINGBo3g009730.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-120myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]