PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02485.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 563aa MW: 62812.5 Da PI: 4.8015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02485.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.3	1.5e-49	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vdiyk++P++Lp + +k+++++w+fF++r++ky++ r+ r t++gyWka Rsa1.0_02485.1_g00006.1 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDIYKLDPSELPrlSVLKSGDRQWFFFTPRNRKYPNAARSGRCTATGYWKA 97 69*************************.89***********544788899************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+ ++ +++ vglkktLvfy+grap+ge+tdWvmhey++ Rsa1.0_02485.1_g00006.1 98 TGKDRVIVY-NSRSVGLKKTLVFYRGRAPSGERTDWVMHEYTM 139 ****9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.545	12	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-55	13	162	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MANSCLKGGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDIY KLDPSELPRL 60 SVLKSGDRQW FFFTPRNRKY PNAARSGRCT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY 120 RGRAPSGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE 180 EWVDHDDDDD VAVPDDHVVR YENNPPPVGD GLLCNPVSIQ SDDLDKLLNE IPNAPGVVAQ 240 RQMNELSGVL QGISEEDIES VLLNNPPGES LVPWDVGKAL PNSHWSFQSN MRSANSFEAT 300 EVKSAFNTSG IAPLVFDKED YIEMDDLLTP ELGASSVEKP TQFSNPGEYG DFNDFDQLFR 360 EVSMSLDMEP ISQEASLSSV SVNDGRQFLY QQQFQDQTFE NKLNSFMDTN TNVDQFTEDM 420 WFKDAQAYLY DQPQSYSLAP SSGVMPESTN PTMSVDGQNQ GGQNVGGGTR SQFSSAMLAW 480 MDSIPSTPAS ACEGPLNRTF VRMSSLSRIR FNGTSVTASK VTVAKKRIRN RGLFVLSIVG 540 ALCAIFWVFI IATVGVLGRP VLL

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MANSCLKGGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDIY KLDPSELPRL  60
SVLKSGDRQW FFFTPRNRKY PNAARSGRCT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY  120
RGRAPSGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE  180
EWVDHDDDDD VAVPDDHVVR YENNPPPVGD GLLCNPVSIQ SDDLDKLLNE IPNAPGVVAQ  240
RQMNELSGVL QGISEEDIES VLLNNPPGES LVPWDVGKAL PNSHWSFQSN MRSANSFEAT  300
EVKSAFNTSG IAPLVFDKED YIEMDDLLTP ELGASSVEKP TQFSNPGEYG DFNDFDQLFR  360
EVSMSLDMEP ISQEASLSSV SVNDGRQFLY QQQFQDQTFE NKLNSFMDTN TNVDQFTEDM  420
WFKDAQAYLY DQPQSYSLAP SSGVMPESTN PTMSVDGQNQ GGQNVGGGTR SQFSSAMLAW  480
MDSIPSTPAS ACEGPLNRTF VRMSSLSRIR FNGTSVTASK VTVAKKRIRN RGLFVLSIVG  540
ALCAIFWVFI IATVGVLGRP VLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-45	14	139	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:23926065}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02485.1_g00006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435615.1	0.0	PREDICTED: NAC domain-containing protein 16-like
Swissprot	A4FVP6	0.0	NAC16_ARATH; NAC domain-containing protein 16
TrEMBL	A0A0D3CGH3	0.0	A0A0D3CGH3_BRAOL; Uncharacterized protein
STRING	Bo5g085440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34180.1	0.0	NAC domain containing protein 16

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053]