PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02421.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 922aa    MW: 103063 Da    PI: 7.0807
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02421.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.8e-28609659252
                   RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ek+i+le+l++yF+++++dAA+++gvc+T+LKriCRq+GI RWP+Rkik++
  Rsa1.0_02421.1_g00001.1 609 EKSIDLEVLRQYFAGSLRDAARNIGVCPTTLKRICRQHGITRWPSRKIKKV 659
                              799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.143598679IPR003035RWP-RK domain
PfamPF020426.6E-24612659IPR003035RWP-RK domain
SuperFamilySSF542773.64E-23810906No hitNo description
Gene3DG3DSA:3.10.20.2401.1E-21816903No hitNo description
SMARTSM006661.9E-26818904IPR000270PB1 domain
PROSITE profilePS5174528.539818904IPR000270PB1 domain
CDDcd064077.87E-38820903No hitNo description
PfamPF005641.3E-17820903IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MEGGGGGEDG SFLPKSSFST FLETAMDMEE LLFDGCWLET TDGKSLKQIT GQPSPSSTTM  60
NGNNNSFLYG YQFAQNPSKD HISNEEILRK FPPVAPGFLK FKEPINQVPL EQSAAMRSAQ  120
GDKFLLEQTE GGRRWWIAPR TSQDPSSSVK DRLFQAIKAI QQDKDFLIQI WVPIQQEGKN  180
FLTTLEQPHF FNPKYSSLKR YRDVSVAYNF LADEDSKESV GLPGRVFLGK LPEWTPDVRF  240
FRSEEYSRIK EAQKCDVRGS LALPVFEIGS GTCLGVLEIV TTTQKMNYKP ELENICKALE  300
AVNLRSSSNL KSPSKEFQQV YNQFYSAILP EVTHFLTWVC RSHDLPLALT WAPCARQGKG  360
GSRHSDENFS ECVSTIDSAC FVLDENSNHF LEACSEHHLL QGEGIVGKAF KATKLFFVPE  420
VTTFSKTNYP LAHHANISGL HAALAVPLKN KFNASVEFVL EFFFPKSCLD TEAQQEMLKS  480
LSVTLQQDFR SLNLVIDIEL ELEVVFPVRE ELLFPEKPLI DAETGENLKP LPLEEISQED  540
SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGLDN SNLLSDAHQL HKASNSGLRP  600
GEKRRTKTEK SIDLEVLRQY FAGSLRDAAR NIGVCPTTLK RICRQHGITR WPSRKIKKVG  660
HSLKKLQVVI DSVQGAQGSI QLDSFYTSFP ELSSPNVSAG TNIKNTHQSK HLNVQTENGV  720
SPPSSFCSHS SGSSACCSTG ANQSSINTAN NTITTLMAEN ASVILKRARS EVRLRTMNHE  780
ETKFLSRTMS HKTFSEHHPL LENLPRLPKS HHSKAGGASK VKATFGEAKV RFTLLPTCGY  840
RELQQEIAKR FNIDNNNIAT FHLKYLDDDK EWVLLTCEAD LEECIDIYRS SSQSRTIKIS  900
VHEASQSKLR GSLGSTGAGP SV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02421.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450921.10.0PREDICTED: protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLV4MB360.0V4MB36_EUTSA; Uncharacterized protein
STRINGXP_006412126.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein