PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02402.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 410aa MW: 46304.9 Da PI: 7.586

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02402.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.3e-32	85	138	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Rsa1.0_02402.1_g00002.1 85 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 138 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.321	81	141	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-30	81	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-16	82	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	85	140	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-10	86	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDDKD EEEEEEEDEE ERSADQSPSN NSYVEESGSH 60 HHHHNNDQIK KSGGSVRPYN RSKTPRLRWT PELHLCFLQA VERLGGPDRA TPKLVLQLMN 120 VKGLSIAHVK SHLQMYRSKK TDDLNQGDQG FSFEHGAGYP YNLSQLPMLQ SFDQGPSTSL 180 GRYSGGSWID HRRQVYRSPW RGLTTRDNTR TRQTLFSSQI GERFHGVSNS ILDDKNKTIS 240 FGTNSHDAVN ANNGIGEAVP RSHRSFLDGM KTFNKSWGQS FSSKPNSSMP SRPQNHIAMT 300 LNSHQRDNPR VGEETENDLK RKRLLLSDDY NKSNQDLDLS LSLKVPPTHN NLGECLLEEG 360 EKEHEDSKRL SLSLSSSTLS QHGRAIRKED QNDHKKRKIS VLASPLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MTPSSQSSEN SKTCPSNNFK ATTTKEDDKD EEEEEEEDEE ERSADQSPSN NSYVEESGSH  60
HHHHNNDQIK KSGGSVRPYN RSKTPRLRWT PELHLCFLQA VERLGGPDRA TPKLVLQLMN  120
VKGLSIAHVK SHLQMYRSKK TDDLNQGDQG FSFEHGAGYP YNLSQLPMLQ SFDQGPSTSL  180
GRYSGGSWID HRRQVYRSPW RGLTTRDNTR TRQTLFSSQI GERFHGVSNS ILDDKNKTIS  240
FGTNSHDAVN ANNGIGEAVP RSHRSFLDGM KTFNKSWGQS FSSKPNSSMP SRPQNHIAMT  300
LNSHQRDNPR VGEETENDLK RKRLLLSDDY NKSNQDLDLS LSLKVPPTHN NLGECLLEEG  360
EKEHEDSKRL SLSLSSSTLS QHGRAIRKED QNDHKKRKIS VLASPLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02402.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232572	0.0	AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482516.1	0.0	PREDICTED: two-component response regulator ORR24-like isoform X1
TrEMBL	A0A397ZQR0	0.0	A0A397ZQR0_BRACM; Uncharacterized protein
STRING	Bo4g188940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-177	G2-like family protein