PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02400.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 33250 Da PI: 5.7616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 142 | 191 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ Rsa1.0_02400.1_g00008.1 142 YRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 191 9****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.49E-23 | 141 | 199 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-38 | 141 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 141 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 141 | 199 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.71E-34 | 142 | 199 | No hit | No description |
Pfam | PF00847 | 1.7E-13 | 142 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 142 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFDEELNLC ITKGKSIDPS LGEASSTTSP RSIKKMKNPD HRSKPYLPFS SFSSSNSLPT 60 FPFSLNPTFQ NQQQLGYVPI NQQNNPTIQG HNQMISFGPQ LPQQQQQYMF RYWSDTLNLS 120 PRGRMMMMNQ ESVIPYSSTR LYRGVRQRQW GKWVAEIRKP RSRARLWLGT FDTAEEAAMA 180 YDRQAFKLRG HNATLNFPER FVDKEVEPND ETDASSSLHQ KKSETPQLNE PSEGSLESKE 240 VAVSDGGVEE GMAEAWFNAV AAGWGPESPL WDDLDNSQFS QSSTSSCPMR PFI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 142 | 200 | 3 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02400.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470119.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
Swissprot | Q9M0J3 | 1e-132 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | M4EBX1 | 1e-180 | M4EBX1_BRARP; Uncharacterized protein | ||||
STRING | Bra026280.1-P | 1e-180 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28140.1 | 1e-121 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|