PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02350.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 343aa    MW: 38953.1 Da    PI: 8.0452
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02350.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1191.8e-3781140261
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                              ++k+l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt GG++r vPvG+grrknk +
  Rsa1.0_02350.1_g00002.1  81 PDKILPCPRCNSADTKFCYYNNYNVSQPRHFCRNCQRYWTSGGTMRTVPVGSGRRKNKGW 140
                              7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3077138IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3183138IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.30485139IPR003851Zinc finger, Dof-type
PROSITE patternPS01361087123IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSELRDTPVK LFGWTITSSS PSLRPHMINN QSAPDNEEQD STSLQRSSDL NEVSKETSEN  60
SEITTTTTTT SEEKTTDLKK PDKILPCPRC NSADTKFCYY NNYNVSQPRH FCRNCQRYWT  120
SGGTMRTVPV GSGRRKNKGW VSSDHYMHIK SEDTNSYNSS SAKILSFESS GEESLVTENG  180
KNQSSDSVSK NFNNLQRFLP PQVTSSVPPP WPYQFPPNPT FYHIPVYWGC TVPFWSTLEP  240
STCLGKRTRD EASHESVEEN KDTFVRARLD SKSQSINDEV DVAKKNRVFY PVPMKREKTQ  300
QFSLFVNDSG TKSSSNRSVP ETYLNLQANP AAMSRSMNFR ETM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02350.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065351e-98AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankCP0026841e-98CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481909.10.0PREDICTED: dof zinc finger protein DOF1.3
SwissprotQ9LQX41e-168DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLA0A3P6EGL30.0A0A3P6EGL3_BRAOL; Uncharacterized protein
STRINGBra024683.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-145Dof family protein