PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02322.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 350aa    MW: 37777.2 Da    PI: 4.8851
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02322.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.62.4e-22246308163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++lk ++++l +e+
  Rsa1.0_02322.1_g00006.1 246 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLKSQYEELLAEN 308
                              89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.2E-287102IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.6E-15143221No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-18238304No hitNo description
PfamPF001708.5E-21246308IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-20246310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.668248311IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-11249305No hitNo description
CDDcd147025.24E-24251301No hitNo description
PROSITE patternPS000360253268IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVGSEMEKTG QENEPKTPPP PPVTSQEPSS SSAVSAGMST TPDWSGFQAY SPMPPHGYVA  60
SSPQPHPYMW GVQHMMPPYG TPPHPYVAMY PPGGMYSHPS LPPGSYPYSP YAMPSPNGMA  120
EASGNTEGDG KQAEEHQLME LVLKGIAESA SDGSSEGSDA NSQNDSGSRN NGKDASDSAH  180
GPPPRNGSNH QPVNQIVPIM PTGVPGPPTN LNIGMEYWSG HGNVSTTVPG VVVDGSSQSQ  240
TWIQDERELK RQKRKQSNRE SARRSRLRKQ AECDELAQRA DVLNGENASL RAEINKLKSQ  300
YEELLAENNS LKNRFPSQEG VNLDKNEQEP EASTRQDVAE TTYGSYNNSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262268RRSRLRK
2262269RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02322.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041471e-128BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447676.10.0PREDICTED: bZIP transcription factor 68
SwissprotQ84LG21e-172BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A0D3CDL90.0A0A0D3CDL9_BRAOL; Uncharacterized protein
STRINGBo5g048660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-137basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]