PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02299.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 435aa    MW: 48478.7 Da    PI: 7.9617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02299.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057597123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F r  nL+ H r H
  Rsa1.0_02299.1_g00007.1 75 FICEICNKGFQRDQNLQLHKRGH 97
                             89******************988 PP
2zf-C2H213.70.00019152174123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  Rsa1.0_02299.1_g00007.1 152 WKCDKCSKKYAVQSDWKAHAKTC 174
                              58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-77497No hitNo description
PfamPF121712.8E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8037597IPR007087Zinc finger, C2H2
SMARTSM003550.0227597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355150117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-7147172No hitNo description
SMARTSM00355150152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSNLTSASGD QASVSSGNRT ETSGSNFQYN INPNQQQEEQ CPAPQKKKRN QPGNPDPDAE  60
VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP WKLKQRSNKD VIRKKVYVCP  120
EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK YAVQSDWKAH AKTCGTKEYK  180
CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS SPHDHQTQHN INFSSSSQNI  240
TSNNNNIHAH ELPTKQEEPH HQFHNIPPWL ISSNPNPSGN NANYFPLASS SASFHHSSPA  300
MSATALLQKA AQMGHSKPTT TPEEEEERAA SLMTTTTMAA SMMTSPSEHG FGFQDYYMMN  360
HHPHHHHGVG EAFNGGFIAG DEKNDVGDDG GGETRDFLGL RSLMSHNEIL SFANNLGNCI  420
NTSASEQQQR FSHQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36148209364Zinc finger protein JACKDAW
5b3h_F6e-36148209364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101114KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02299.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451546.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3P6BBU90.0A0A3P6BBU9_BRACM; Uncharacterized protein
TrEMBLM4EQ150.0M4EQ15_BRARP; Uncharacterized protein
STRINGBra030886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]