PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02241.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 396aa    MW: 44523.8 Da    PI: 7.316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02241.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.13e-35421941128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                              lp+G++F+Ptd+elv e+L++kv+gk+           +   +    +i+   +i++++P++Lp  v+++  + +fF+k +++y+t
  Rsa1.0_02241.1_g00002.1  42 LPAGVKFDPTDQELV-EHLEAKVKGKEennkwfpshplI---DefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTT 122
                              799************.99********9776666664332...143333555545**********.555666799************ PP

                      NAM  71 gkrknra.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              g+rk+r+              ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Rsa1.0_02241.1_g00002.1 123 GTRKRRKiiqtdhdseltgsPSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
                              ******8899999999977644788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-3834213IPR003441NAC domain
PROSITE profilePS5100531.17342213IPR003441NAC domain
PfamPF023651.1E-1543194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKNTCNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE  60
AKVKGKEENN KWFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY  120
TTGTRKRRKI IQTDHDSELT GSPSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNINWSEHKV SSKDLIGIGA  240
GDEICGVAAA LQSLGSGDVV SRVNTNPFTR AFGEGTAEAS KGRENQRVAG TCEEVHDGVI  300
RSSSSTSYHM IHDHNQHHQI GEIREFHIPS SSSYQHETIF NITSNAPFQQ QQLRGRSCGS  360
GLEDLIMGCT STCTEEENSE AIPQQSADWL TFPPFW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02241.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456809.10.0PREDICTED: NAC domain-containing protein 73 isoform X1
RefseqXP_018456810.10.0PREDICTED: NAC domain-containing protein 73 isoform X1
SwissprotQ9M0F81e-114NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078H5Z60.0A0A078H5Z6_BRANA; BnaC09g33190D protein
STRINGBo9g126190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]