PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02216.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28022.1 Da PI: 9.9644 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd lv +++++G ++W + +++ g++R++k+c++rw++yl Rsa1.0_02216.1_g00002.1 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAGLHRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ Rsa1.0_02216.1_g00002.1 67 KGKFTAQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.184 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.26E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.30E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.589 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.01E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGLHRCG KSCRLRWLNY 60 LKPGIKKGKF TAQEEEDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLRRSG 120 IDPMTHGPIK TTSSTRSSPA RRHSSSTSSF SLSSTGSVRL LNKLAAGISS RKFGLDRIKT 180 VMISSEPRQV DDEEKVMIGS KKEEERVIGC FMEIDKNLIS TMSLDELPCD SSYYYCDDWL 240 RGCFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02216.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468444.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9M0J5 | 5e-57 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | A0A078HV83 | 1e-157 | A0A078HV83_BRANA; BnaC02g22880D protein | ||||
TrEMBL | A0A0D3AQH4 | 1e-157 | A0A0D3AQH4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g081100.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 1e-105 | myb domain protein 95 |
Publications ? help Back to Top | |||
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