PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02216.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 245aa    MW: 28022.1 Da    PI: 9.9644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02216.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg WT+eEd  lv +++++G ++W + +++ g++R++k+c++rw++yl
  Rsa1.0_02216.1_g00002.1 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAGLHRCGKSCRLRWLNYL 61
                             89********************************************97 PP

2Myb_DNA-binding55.51.3e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +g++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
  Rsa1.0_02216.1_g00002.1  67 KGKFTAQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                              79********************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.184961IPR017930Myb domain
SuperFamilySSF466897.26E-3011108IPR009057Homeodomain-like
SMARTSM007179.2E-161363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-231568IPR009057Homeodomain-like
CDDcd001675.30E-111661No hitNo description
PROSITE profilePS5129425.58962116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1667111IPR001005SANT/Myb domain
CDDcd001677.01E-1069109No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGLHRCG KSCRLRWLNY  60
LKPGIKKGKF TAQEEEDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLRRSG  120
IDPMTHGPIK TTSSTRSSPA RRHSSSTSSF SLSSTGSVRL LNKLAAGISS RKFGLDRIKT  180
VMISSEPRQV DDEEKVMIGS KKEEERVIGC FMEIDKNLIS TMSLDELPCD SSYYYCDDWL  240
RGCFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02216.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468444.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9M0J55e-57MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A078HV831e-157A0A078HV83_BRANA; BnaC02g22880D protein
TrEMBLA0A0D3AQH41e-157A0A0D3AQH4_BRAOL; Uncharacterized protein
STRINGBo2g081100.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-105myb domain protein 95
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]