PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02207.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 659aa    MW: 73750.3 Da    PI: 8.6075
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02207.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.52.7e-28407458152
                   RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              aek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Rsa1.0_02207.1_g00006.1 407 AEKDITLDILKQHFAGSLKDAAKNIGVCPTTLKRICRQHGIARWPSRKIKKV 458
                              589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.813394478IPR003035RWP-RK domain
PfamPF020427.7E-25411458IPR003035RWP-RK domain
SuperFamilySSF542772.21E-18568655No hitNo description
Gene3DG3DSA:3.10.20.2401.9E-19570655No hitNo description
PROSITE profilePS5174521.172573656IPR000270PB1 domain
SMARTSM006661.6E-18573656IPR000270PB1 domain
CDDcd064071.11E-31574655No hitNo description
PfamPF005641.5E-16575655IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006107Biological Processoxaloacetate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050152Molecular Functionomega-amidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MLMQMEESNN SGMVDFPENF MDQQLLWEEE VSVRSSLGLK ERVTCAMGHL QEVMGGEKEL  60
LVQPWVPVER GRRRVVSTEK QPFSLNLFSQ SQSQSQSQSQ SLALYRDISA GYSFAAEVGS  120
DELVGLPGRV FLNRIPEWTP DVRFFRNEEY LRIGYAHRYQ VRASLALPLC HALQAFDLRS  180
SESSIVPTSL KPHTDDLHRE VASILKGICI SYGLPLAITW GHQQGSCLSA IVSACYASDQ  240
KSRSFLSACS EHHLLAKEGI AGTAFATKKQ YFAKDVAILS YQLSHYAKMF DLHAALAIPL  300
LTRCSRRTVQ FVLEFFFPRD CLINQRLILD SLASQLILRF QSSPNLMVDD QLAEEFTDTH  360
TAALTIEESP CMSHKGKGKH VSVSWSGEVR EPSLSSSLGS RKRKTRAEKD ITLDILKQHF  420
AGSLKDAAKN IGVCPTTLKR ICRQHGIARW PSRKIKKVGH SLRKLKVVMD SVQGVQGSHH  480
LASFYSSFPQ LQSSSSLPLP LLDPTKSVHN KSPHPSSSSS SGSSTCCSSE EKQLVGGCFH  540
KPSQLRSLRK DEQRAEVRVT SSLPPLPSAK EDGIKVNAMF GESKMRMSLK HHWGIGDLRR  600
EIAKRFGMDV TSNFRLKYMD DDDEWVLLTC DADLEECIQI YKSSLYKETA VRISVSSLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399404SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02207.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479003.10.0PREDICTED: protein NLP3-like
SwissprotQ9SVF10.0NLP3_ARATH; Protein NLP3
TrEMBLA0A397ZEP80.0A0A397ZEP8_BRACM; Uncharacterized protein
STRINGBra033561.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152871718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.10.0Nin-like family protein
Publications ? help Back to Top
  1. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]