PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02206.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 299aa    MW: 32505.7 Da    PI: 7.2078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02206.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.7e-10236281655
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri  ++ +L+el+P+ +        s ae+L +A e+Ik Lq
  Rsa1.0_02206.1_g00007.1 236 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 281
                              689*********************55.....789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-13233288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-10234285No hitNo description
Gene3DG3DSA:4.10.280.101.2E-10235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYHPSSSKST APDDGDAVNN PYDETTGGFS SLGSQTHHNL PPPPPQQHNP NVVGFGHYFS  60
GEPSTIGHSG ASSSSLFRHR SSPAGFYDQL LPTDPNGRPN GGYGGGRGRE DGGTSTLKSE  120
LRFSGGSSSN YQEHNTLPRI SEVQAAGAAI NGVASTSMSF GNDNNNWNRP SSHISFTIDE  180
PGKRSKTTDF FTLETQFSMP QTSLEMARME SLMNIPEGSV PCRVRAKRGC ATHPRSIAER  240
DRRTRISGKL KKLQELVPNI DNQTSYAEML DLAAEHIKGL QHEVEVRLSV HSIYYIVSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02206.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478575.11e-179PREDICTED: transcription factor bHLH129-like isoform X1
RefseqXP_018478576.11e-179PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-119BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A3P6D6J31e-166A0A3P6D6J3_BRAOL; Uncharacterized protein
STRINGBra037732.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.11e-108bHLH family protein