PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02199.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 698aa    MW: 78253.5 Da    PI: 6.585
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02199.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.41.2e-49782131134
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +++   ++++++ 
  Rsa1.0_02199.1_g00005.1  78 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHHQT---NHVVQFP 160
                              6899******************************************************************999888...8999999 PP

                   DUF822  87 saspesslq.sslkssalaspvesysaspksssfpspssldsislasa....a 134
                              ++s+es+l+ ++lk++a+a+   ++++s++ ++ +sp+slds+ +a++    +
  Rsa1.0_02199.1_g00005.1 161 TRSTESPLSsTTLKNCAKAALDCQQHPSLRIDENLSPVSLDSVVIAESdhpgN 213
                              999999999889********************************998755550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.9E-4779226IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.5E-160247686IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.2E-171250681IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.7E-83256652IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55286300IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55307325IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55329350IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55422444IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55495514IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55529545IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55546557IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55564587IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.1E-55602624IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MHTLNTTTTG SQDPIDPNRN LDPDQYPHHR NPNHPQSRRP RGFAATAAAA SMGQADSDVN  60
NGNIAGETSS GGGGGGGGGK GKREREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPA  120
RADMNDVIAA LAREAGWSVD ADGTTYRQSH HQTNHVVQFP TRSTESPLSS TTLKNCAKAA  180
LDCQQHPSLR IDENLSPVSL DSVVIAESDH PGNGRYTGAS PIPSVGCVDA NQLIQDVHST  240
ERRNDFAENF YVPVYAMLPV GIIDNFGQLV DPQGVRQELS YMKSLNVDGV AIDCWWGIVE  300
GWNPHKYVWS GYRELFNLIR DFKLKLQVVM AFHEYGGNAS GNVVISLPQW VLETGKNNPD  360
IFFTDREGRR SFECLNWSID KERVLHGRTG IEVYFDFMRS FRSEFDDLFV EGLIAAIEIG  420
LGASGELKYP SFPERMGWIY PGIGEFQCYD KYSQTSLLKE AKSRGFAFWG KGPENAGQYN  480
SQPHETGFFQ ERGEYDSYYG RFFLNWYSQL LIGHAENVLS LANLAFEETK IIVKIPAIYW  540
SYKTASHAAE LTAGYYNPSN RDGYSPVFES LKKYSVTVKF VCPGPQMSSN EHEEALADPE  600
GLSWQVVNAA WDKGLLIGGE NAITCFDREG CMRLIEMAKP RNHPDSNHFS FFTYHQPSPL  660
VQGSTCFADL DYFIKRMHGE VIYRDKTVVG TWKSKPCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11725168311447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02199.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442031.10.0PREDICTED: beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A3P6ASJ00.0A0A3P6ASJ0_BRACM; Beta-amylase
STRINGBo2g127050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]