PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02192.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 375aa    MW: 42554.1 Da    PI: 8.7084
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02192.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32204257255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Rsa1.0_02192.1_g00010.1 204 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 257
                              9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15201257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28202257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23204257IPR006447Myb domain, plants
PfamPF002492.4E-7205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRP EQEDHEELDL GFWRRALDSR TSSLVSNSSS  60
KKNNNHPLED LSLSNNSIHH QQQHPHLLPN YNGSNIFTSS QFPTQQHLQD FLAHDLNTHL  120
RPIRGIPLYQ NPPPHNHYRP PPCFPFDPSS LIHSSSPAPT GINNNTFGTR RVNPNHHNHQ  180
HHHQTLNRAR FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV  240
KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDGWMFD MNRKSRDSNE  300
LTNPLEKSNG RWTNSSGEAR LHGKQIDNVA EIMLPSENEL DGKCSSYERI SSEEMSSSNI  360
SGTSPFKPNL EFTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02192.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934910.0AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487391.10.0PREDICTED: probable transcription factor KAN2
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A3P6EWL90.0A0A3P6EWL9_BRAOL; Uncharacterized protein
STRINGBra023254.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-171G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]