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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rsa1.0_02179.1_g00003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 289aa MW: 33471.8 Da PI: 6.8826 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 74.8 | 1.2e-23 | 13 | 80 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.............kAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrW+ eLH+rF++av+qLGG++ +AtPk ++++++++ Ltl+h+kSHLQkYRl
Rsa1.0_02179.1_g00003.1 13 KPRLRWSYELHHRFIDAVNQLGGPNssvsvpflllkpyQATPKGLMRILEIPELTLYHLKSHLQKYRL 80
79*********************86444444444444479***************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 11 | 83 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.51E-11 | 12 | 83 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.3E-7 | 50 | 80 | IPR006447 | Myb domain, plants |
| Pfam | PF14379 | 3.6E-15 | 131 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence Send to blast |
MDNDKNHKAE EAKPRLRWSY ELHHRFIDAV NQLGGPNSSV SVPFLLLKPY QATPKGLMRI 60 LEIPELTLYH LKSHLQKYRL EIRERFIGNK QDVSSAAKSQ ERQNQKYFGD QPDVIVTEEK 120 DDEPNKSRNL QIKEAIEIQL GVQKKLHEQI ERKLQDRIEA QGKYLESVLM KAQETLSASG 180 YRSSNLYGAA WTASRSCLSS EDDEAEEEYD FLGLKKAENK GIEPTRSLVD CSLASSECSE 240 AEQDIHSLTI MRRSNKLQFT EKPEEVMDRK KRRWDDVVCV EQSIRKRAF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 3e-13 | 13 | 79 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-13 | 13 | 79 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-13 | 13 | 79 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-13 | 13 | 79 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-13 | 12 | 79 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Rsa1.0_02179.1_g00003.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC189385 | 2e-65 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018447997.1 | 0.0 | PREDICTED: myb family transcription factor PHL8-like | ||||
| Swissprot | F4I274 | 2e-68 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
| TrEMBL | A0A3N6Q2G9 | 1e-138 | A0A3N6Q2G9_BRACR; Uncharacterized protein | ||||
| STRING | Bra016289.1-P | 1e-131 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3878 | 27 | 59 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69580.2 | 1e-72 | G2-like family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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