PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02147.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 257aa MW: 28957.6 Da PI: 5.0079 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 81.2 | 1.6e-25 | 35 | 126 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d++++ ++s s+n+nsf+v+d+ +fa+ +LpkyF h+n++SF+R+Ln+YgF kv+ ++ w F+++ k Rsa1.0_02147.1_g00006.1 35 FLSKTYDMVDDPSTDPIVSGSANSNSFIVWDPPQFAQVLLPKYFNHNNLSSFIRKLNTYGFWKVDPDR---------WDFANEVGK 111 9****************************************************************999.........999999999 PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 g +e++e++kr k+ Rsa1.0_02147.1_g00006.1 112 FGLEEEVERLKRDKN 126 999999999999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.2E-28 | 30 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.9E-39 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.35E-24 | 33 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.7E-21 | 35 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.1E-16 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.1E-16 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.1E-16 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDGGKSGGGS VTMESTEIPQ PQPVAVLSGN VAPPFLSKTY DMVDDPSTDP IVSGSANSNS 60 FIVWDPPQFA QVLLPKYFNH NNLSSFIRKL NTYGFWKVDP DRWDFANEVG KFGLEEEVER 120 LKRDKNVLMQ ELVRLRQPQQ FTDNNLQTIV QRLQGMENRQ QQRINDTSKK RRFKQDGIVT 180 RKDSDGQLVK YQPPMHEQAK AMLKQLMKME PYKTGDDGFL LGDGSSTTTE GTEMEISSNN 240 VSGMILQEMP TASDIQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-19 | 32 | 123 | 17 | 119 | Heat shock factor protein 1 |
5d5u_B | 4e-19 | 23 | 123 | 18 | 128 | Heat shock factor protein 1 |
5d5v_B | 4e-19 | 23 | 123 | 18 | 128 | Heat shock factor protein 1 |
5d5v_D | 4e-19 | 23 | 123 | 18 | 128 | Heat shock factor protein 1 |
5hdg_A | 4e-19 | 32 | 123 | 7 | 109 | Heat shock factor protein 1 |
5hdn_A | 4e-19 | 32 | 123 | 7 | 109 | Heat shock factor protein 1 |
5hdn_B | 4e-19 | 32 | 123 | 7 | 109 | Heat shock factor protein 1 |
5hdn_C | 4e-19 | 32 | 123 | 7 | 109 | Heat shock factor protein 1 |
5hdn_D | 4e-19 | 32 | 123 | 7 | 109 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 8 | GGKSGGG |
2 | 168 | 173 | KKRRFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02147.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC084110 | 7e-62 | AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 7e-62 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F5D14 | 7e-62 | AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586097.1 | 1e-127 | PREDICTED: heat stress transcription factor A-1d | ||||
Swissprot | Q9LQM7 | 1e-127 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A0D3CDP8 | 1e-126 | A0A0D3CDP8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6TL04 | 1e-126 | A0A3N6TL04_BRACR; Uncharacterized protein | ||||
STRING | Bostr.3359s0126.1.p | 1e-126 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6470 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-110 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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