PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02139.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 386aa MW: 42791 Da PI: 7.2469

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02139.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.7	8.4e-27	208	267	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ Rsa1.0_02139.1_g00004.1 208 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGTHDHP 267 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.3E-28	192	269	IPR003657	WRKY domain
PROSITE profile	PS50811	24.593	202	269	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-24	203	269	IPR003657	WRKY domain
SMART	SM00774	9.6E-33	207	268	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	208	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MIKEKISSCV HPSDGVMAES DKEVELDATK AKLEKVREEN EKLKLLLSTV LTDYKSLQMH 60 VSRVFRPQHE ASMELDINSH DDFGVDISLR LGRPDLNVSK SVDEINKISL DKISDEISEG 120 SDKKRSALGL GFRIRSCEDL YTDQTMKLDC LCKDVKIKNV DNKCISSRKD VKAARNEDHQ 180 EVLEGQEQTG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKANPLPRAY YRCSMSSNCP 240 VRKQVQRCGE DDTSAYMTTY EGTHDHPLPM EATNMAAGTS AAASLLQSGS SSSASLSCFF 300 PFHNVSFSTT NSHPTVTLDL TRPNYDPDQL PNYPLSSSSL SFSSSDRPSP SKSQTLSFSG 360 LRSHSPLIKY SQTASLSHQT KLSGQQ

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MIKEKISSCV HPSDGVMAES DKEVELDATK AKLEKVREEN EKLKLLLSTV LTDYKSLQMH  60
VSRVFRPQHE ASMELDINSH DDFGVDISLR LGRPDLNVSK SVDEINKISL DKISDEISEG  120
SDKKRSALGL GFRIRSCEDL YTDQTMKLDC LCKDVKIKNV DNKCISSRKD VKAARNEDHQ  180
EVLEGQEQTG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKANPLPRAY YRCSMSSNCP  240
VRKQVQRCGE DDTSAYMTTY EGTHDHPLPM EATNMAAGTS AAASLLQSGS SSSASLSCFF  300
PFHNVSFSTT NSHPTVTLDL TRPNYDPDQL PNYPLSSSSL SFSSSDRPSP SKSQTLSFSG  360
LRSHSPLIKY SQTASLSHQT KLSGQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	207	269	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02139.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912404	0.0	EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454553.1	0.0	PREDICTED: probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-160	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A397YXU6	0.0	A0A397YXU6_BRACM; Uncharacterized protein
STRING	Bo6g110430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-152	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]