PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02131.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CO-like

Protein Properties

Length: 342aa MW: 37407.9 Da PI: 5.6708

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02131.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.9	9.9e-09	19	58	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40 +r C+ +++ + fC+ ++ +lC C +++H H++v Rsa1.0_02131.1_g00001.1 19 ARSCDACKSASAAVFCRVDSAFLCIACDTSIHTFtrHERV 58 578*****************************55778875 PP
2	zf-B_box	25.5	2.8e-08	60	103	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ ++ C+ + lC C + +H+ H++vp+ Rsa1.0_02131.1_g00001.1 60 LCEVCEQAPAAVTCKADAASLCVACDSDIHSAnplasrHERVPV 103 6*****************************66999999999986 PP
3	CCT	70.1	5.8e-24	274	317	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Rsa1.0_02131.1_g00001.1 274 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 317 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.95	17	60	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-8	17	60	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-7	20	58	IPR000315	B-box-type zinc finger
CDD	cd00021	2.25E-8	20	58	No hit	No description
PROSITE profile	PS50119	10.637	56	103	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.3E-6	60	103	IPR000315	B-box-type zinc finger
CDD	cd00021	1.20E-8	60	103	No hit	No description
SMART	SM00336	2.3E-9	61	103	IPR000315	B-box-type zinc finger
Pfam	PF06203	5.2E-18	274	316	IPR010402	CCT domain
PROSITE profile	PS51017	16.817	274	316	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGFGLESIKS LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCIACDTSIH TFTRHERVYL 60 CEVCEQAPAA VTCKADAASL CVACDSDIHS ANPLASRHER VPVEPFFDSA AAKISPSTFG 120 VLGSSTTVDL TAVPVMGSAD ELDLCPWLLP NDFNEPAKIE TGTELKSSEF VFSDFDRLID 180 FEYPNTFGAD SLVPVQTKTE PLPLTNNEHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE 240 YGVVPDGTTS VPFNRSTITT STATTGDQPS SMDREARVLR YREKRKNRKF EKTIRYASRK 300 AYAESRPRIK GRFAKRTEAE NDDVFFSQVY ASAGHYGVVP TF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGFGLESIKS LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCIACDTSIH TFTRHERVYL  60
CEVCEQAPAA VTCKADAASL CVACDSDIHS ANPLASRHER VPVEPFFDSA AAKISPSTFG  120
VLGSSTTVDL TAVPVMGSAD ELDLCPWLLP NDFNEPAKIE TGTELKSSEF VFSDFDRLID  180
FEYPNTFGAD SLVPVQTKTE PLPLTNNEHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE  240
YGVVPDGTTS VPFNRSTITT STATTGDQPS SMDREARVLR YREKRKNRKF EKTIRYASRK  300
AYAESRPRIK GRFAKRTEAE NDDVFFSQVY ASAGHYGVVP TF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02131.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU949798	0.0	KU949798.1 Raphanus sativus var. raphanistroides isolate Rs-1 CONSTANS-like zinc finger protein 5 (COL5) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449754.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
Swissprot	Q9FHH8	0.0	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A3P6CRC2	0.0	A0A3P6CRC2_BRAOL; Uncharacterized protein
STRING	Bo2g030190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7899	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	0.0	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]