PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02105.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 746aa MW: 83229.6 Da PI: 7.4395

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02105.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.8e-29	473	523	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Rsa1.0_02105.1_g00001.1 473 EKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 523 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	462	543	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-27	475	523	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.16E-20	632	731	No hit	No description
PROSITE profile	PS51745	18.289	641	728	IPR000270	PB1 domain
SMART	SM00666	1.4E-21	641	728	IPR000270	PB1 domain
Pfam	PF00564	5.1E-17	642	727	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.8E-24	642	728	No hit	No description
CDD	cd06407	1.35E-32	642	727	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
SESETATKDN HHLLPSPSWG GGLMPLENPD TYCAIKAKMT QALRFFKEST GQQHLLAQVW 60 APVKNRNGRY LLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SLDSERDDGE LGLPGRVFRK 120 KLPEWTPNVQ YYSSKEFSRL GHALNYNVQG TLALPVFEPS RQLCVGVVEL IMTSPKINYA 180 PEVEKVCKAL EAVNLKTSEI LNHESTQICN EGRQNALAEI LEILTVVCET YKLPLAQTWV 240 PCRHRSVLAF GGGFKKSCSS FDGSCMGKVC MSTSDLAVYV VDAHVWGFRD ACAEHHLQKG 300 QGVAGRAFLS GNLCFCRDVT RFCKTDYPLV HYARMFKLTS CFAVCLKSTY TGDDEYVLEF 360 FLPPGITDRG EQDSLLGSLF QTMKQHYSSL KVVSGSELFE NEMSIEVVEA SEDGMVYSKL 420 EPIQVHHHLQ LNAPEEKLSL KPVENKEVAF QTLNPSPEAK NEKKSERKRG KTEKTISLEV 480 LQQYFSGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTRL KHVIDSVQGA 540 DGSINLKSLS SPPWQVSQPP TTRSPTQDIK LENRDAEDSA GSSTSRASCK VSPISETRFR 600 LLTQNQEAFK QTAFDESDST SKNIANNFWT SQDTATLHNK LVSIKATYRE DIIRFKISPE 660 SISIAELKQQ VAKRLKLETG AFDLKYLDDD KEWVSVSCDA DLTECLIDTS SVVTAAKANT 720 LRLSVHDVTP NFGSSCESSE EIMMCL

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

SESETATKDN HHLLPSPSWG GGLMPLENPD TYCAIKAKMT QALRFFKEST GQQHLLAQVW  60
APVKNRNGRY LLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SLDSERDDGE LGLPGRVFRK  120
KLPEWTPNVQ YYSSKEFSRL GHALNYNVQG TLALPVFEPS RQLCVGVVEL IMTSPKINYA  180
PEVEKVCKAL EAVNLKTSEI LNHESTQICN EGRQNALAEI LEILTVVCET YKLPLAQTWV  240
PCRHRSVLAF GGGFKKSCSS FDGSCMGKVC MSTSDLAVYV VDAHVWGFRD ACAEHHLQKG  300
QGVAGRAFLS GNLCFCRDVT RFCKTDYPLV HYARMFKLTS CFAVCLKSTY TGDDEYVLEF  360
FLPPGITDRG EQDSLLGSLF QTMKQHYSSL KVVSGSELFE NEMSIEVVEA SEDGMVYSKL  420
EPIQVHHHLQ LNAPEEKLSL KPVENKEVAF QTLNPSPEAK NEKKSERKRG KTEKTISLEV  480
LQQYFSGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTRL KHVIDSVQGA  540
DGSINLKSLS SPPWQVSQPP TTRSPTQDIK LENRDAEDSA GSSTSRASCK VSPISETRFR  600
LLTQNQEAFK QTAFDESDST SKNIANNFWT SQDTATLHNK LVSIKATYRE DIIRFKISPE  660
SISIAELKQQ VAKRLKLETG AFDLKYLDDD KEWVSVSCDA DLTECLIDTS SVVTAAKANT  720
LRLSVHDVTP NFGSSCESSE EIMMCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02105.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457723.1	0.0	PREDICTED: protein NLP6
Refseq	XP_018457750.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	M4FII5	0.0	M4FII5_BRARP; Uncharacterized protein
STRING	Bra040914.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]