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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_02068.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 318aa MW: 35690.2 Da PI: 9.7688 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_02068.1_g00006.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 361.8 | 1.3e-110 | 1 | 318 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78
mdd g+r+ g+++ ++++ ++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd
Rsa1.0_02068.1_g00006.1 1 MDDGGHRD--NGWHKasqgkwmmQQQQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERD 84
88888855..444444456666633344444556**************************************************** PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
++l+al++++ns +p++ q + +i+++q++++ ql+++a+e+re+e ++ + +a+++ +++k +pk+++
Rsa1.0_02068.1_g00006.1 85 SALAALQYRDNS----MPTSRQ---HQPHIHHHQHQHHmVQLTENAYETREMEPNDGSALDSAKPKRGKRAK--------EPKATT 155
********9998....444444...444566666655559*********99997777666665555444444........444433 PP
GAGA_bind 164 ak..kkkkksekskkkvkkesader.....................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkW 225
++ +++k+++k +kvkke++de sk+++ks++ +ln+v +De+t+P+PvCsCtG+lrqCYkW
Rsa1.0_02068.1_g00006.1 156 TTkaAANKRGPKAPRKVKKENEDELtkimfvktnldyggeeeaatgSKSDWKSQETvGLNQVVYDETTMPPPVCSCTGVLRQCYKW 241
331123333444445555555442235667778999******************9659**************************** PP
GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
GnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
Rsa1.0_02068.1_g00006.1 242 GNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 318
***************************************************88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASQGKWM MQQQQQHQPS MKQVMSIIAE RDAAIQERNL AISEKKAAVA 60
ERDMAFLQRD TAIAERNNAI MERDSALAAL QYRDNSMPTS RQHQPHIHHH QHQHHMVQLT 120
ENAYETREME PNDGSALDSA KPKRGKRAKE PKATTTTKAA ANKRGPKAPR KVKKENEDEL 180
TKIMFVKTNL DYGGEEEAAT GSKSDWKSQE TVGLNQVVYD ETTMPPPVCS CTGVLRQCYK 240
WGNGGWQSSC CTTTLSMHPL PALPNKKHAR VGGRKMSGSA FSKLLSRLAA EGHHDLSNPV 300
DLKDHWAKHG TNRYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189297 | 1e-146 | AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence. |
| GenBank | EF529513 | 1e-146 | EF529513.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF529514 | 1e-146 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
