PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02058.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25390.8 Da PI: 8.8046 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Rsa1.0_02058.1_g00004.1 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP | |||||||
2 | START | 36.1 | 1.5e-12 | 159 | 225 | 2 | 69 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddk 69 +a e+++e+++ka+ ++ W +++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d+ Rsa1.0_02058.1_g00004.1 159 IADETLTEFISKATGTAVEWIQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPT-RVAEILKDR 225 68899*****************************************************.888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.37 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-17 | 14 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.42E-16 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 3.9E-17 | 16 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-19 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.77E-6 | 67 | 106 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-4 | 71 | 108 | No hit | No description |
Pfam | PF01852 | 8.6E-10 | 159 | 225 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGGGSNNSHH IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY ENSYFRQHPQ 120 NGNLTTTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWIQ 180 MPGMKPGPDS IGIVAISHGC TGIAARACGL VGLDPTRVAE ILKDRY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02058.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441292 | 0.0 | AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene). | |||
GenBank | AY099631 | 0.0 | AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds. | |||
GenBank | BT008798 | 0.0 | BT008798.1 Arabidopsis thaliana At4g32880 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447492.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like | ||||
Swissprot | Q39123 | 1e-159 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A078GUE2 | 1e-160 | A0A078GUE2_BRANA; BnaC03g66860D protein | ||||
TrEMBL | A0A078I587 | 1e-160 | A0A078I587_BRANA; BnaA08g11980D protein | ||||
TrEMBL | A0A3P6B5V0 | 1e-159 | A0A3P6B5V0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BUM0 | 1e-159 | A0A3P6BUM0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F0E5 | 1e-159 | M4F0E5_BRARP; Uncharacterized protein | ||||
TrEMBL | V4P388 | 1e-159 | V4P388_EUTSA; Uncharacterized protein | ||||
STRING | Bra034539.1-P | 1e-160 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18074 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 1e-161 | homeobox gene 8 |