PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02054.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 332aa    MW: 36899.2 Da    PI: 7.7596
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02054.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.1e-37531682133
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                               g+kdrhsk+ T++g+RdRR+Rls+++a++f+dLqd+LGfd++sk++eWL+++a  +i el+    +++  + +            
  Rsa1.0_02054.1_g00007.1  53 SGGKDRHSKVLTSKGLRDRRIRLSVSTAIQFYDLQDRLGFDQPSKAVEWLINAAADSISELPPI-INTS--F-D------------ 122
                              689************************************************************9.2222..1.1............ PP

                      TCP  88 gkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                               +a + +++  +s +s++s+l+l++ esr kar+rarert++++ ++
  Rsa1.0_02054.1_g00007.1 123 -QALSLSKSACSSGTSESSMLSLSRtESRGKARERARERTAKDKDKD 168
                              .1222233344556777778********************9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3354137IPR005333Transcription factor, TCP
PROSITE profilePS5136931.80255113IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.833147165IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEVDDDIDAH QQQEQQQQTS RKLQRISSDN NDKTVMRDWN NPSSRIIRVS RASGGKDRHS  60
KVLTSKGLRD RRIRLSVSTA IQFYDLQDRL GFDQPSKAVE WLINAAADSI SELPPIINTS  120
FDQALSLSKS ACSSGTSESS MLSLSRTESR GKARERARER TAKDKDKDLQ NAPDQSSFTQ  180
LLTGGFDEPN RNWIGGSSSD CFNPVQLLPS PSSSSSLHHH YNNSNHRQET SLNHHFSFVP  240
DYNFGISSSD SPGAAAVNGG CYTSRGTLQS NSHSLFLNNN NNNVNQRPIS FMATPPPLDH  300
HNHQLPAAFD GRLYLYYGEG NRSSDDKGKD GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2160114155Putative transcription factor PCF6
5zkt_B1e-2160114155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02054.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468446.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_018468453.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-146TCP24_ARATH; Transcription factor TCP24
TrEMBLM4EU830.0M4EU83_BRARP; Uncharacterized protein
STRINGBra032365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-120TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]