PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01989.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17933.4 Da    PI: 10.2078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01989.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-201462250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +++++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  Rsa1.0_01989.1_g00006.1 14 SSSSYSLAATSLQGRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 62
                             799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.0682365IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-122885IPR002100Transcription factor, MADS-box
PfamPF003191.5E-102861IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRSPRPHSCS KSSSSSSYSL AATSLQGRLL TIFKKAQELT TLCDIEACVI HYGPDGELRT  60
WPENRDQVRD LAKRRKKSVN LYEFLNKMKT KNKKMTNNFK KKANRNVEEL KYPSSDHYYS  120
VDQINQLIQS LELSSSKLQS LSFGKGKLEG ASTFFEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01989.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479656.11e-71PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-36AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A397ZSC18e-60A0A397ZSC1_BRACM; Uncharacterized protein
STRINGBra025619.1-P3e-57(Brassica rapa)
STRINGBo4g139560.12e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.12e-31AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]