PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01961.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 438aa MW: 49483.9 Da PI: 9.2199 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H Rsa1.0_01961.1_g00002.1 78 YICEICNQGFQRDQNLQMHRRRH 100 89********************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 157 | 178 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ Rsa1.0_01961.1_g00002.1 157 ICERCSKGYAVQSDYKAHLKTC 178 7*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.88E-5 | 75 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 120 | 150 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 110 | 156 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MMRTDQGAVV MLNAASNKNT TNTCCVVSSS SSDPFLSSSE NGVTTTNTSN QKRKRRPADP 60 DAEVVSLSPR TLLESDRYIC EICNQGFQRD QNLQMHRRRH KVPWKLLKRD NNIEVKKRVY 120 VCPEPTCLHH DPCHALGDLV GIKKHFRRKH SNHKQWICER CSKGYAVQSD YKAHLKTCGT 180 RGHSCDCGRV FSRVESFIEH QDKCSVRKVH REPPPRPQPT VTVPTCSSRT ASTTSTPSTE 240 TNYGGALATP LPLEGRPIPI RNFSSNNVNL ELQLLPLTPN QNPHQENQQH KVKEPSHHRN 300 HHDTTNLNLS IAPSAPSLSH QYNNFDRIKE IMASEHIMKI AMKEKTYAEE AKREAKKQRE 360 IAENEFVNAK KIRQQAQVEL ERAKILKEES MKKINSTIMQ VTCQTCKGQF QAIAVPAADE 420 TSLVVSYMSS GNTDEEGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-17 | 154 | 206 | 5 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 2e-17 | 154 | 206 | 5 | 57 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01961.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226703 | 0.0 | AK226703.1 Arabidopsis thaliana mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL07-61-I21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439399.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 0.0 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3P6AWF4 | 0.0 | A0A3P6AWF4_BRACM; Uncharacterized protein | ||||
STRING | Bra026624.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 0.0 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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