PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01943.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19815.5 Da PI: 4.53 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.6 | 7.8e-09 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51 ie+ r++ +R +g++K AeEL +L d+ +++ +gk+ ++s Rsa1.0_01943.1_g00008.1 11 IEDRKARNIACQQRMKGLMKMAEELTTLGDTSACLTFSNrDDGKMVAWPS 60 89999*****************************9755424688888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.348 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-5 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.28E-12 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-9 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGRPKLKLAW IEDRKARNIA CQQRMKGLMK MAEELTTLGD TSACLTFSNR DDGKMVAWPS 60 QEEAYDPESY IKTKIKEIEK RLEDTRKVVE ELEIDRLMLH IEDGGKIADL SQTELEMLKS 120 FVSKKIMYLE RKLGMQHPDT SGKEPVLGDE GLLDDNEDME TNEGDSTKSG GADDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01943.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443381.1 | 1e-125 | PREDICTED: uncharacterized protein LOC108815233 | ||||
TrEMBL | A0A397XQA7 | 5e-67 | A0A397XQA7_BRACM; Uncharacterized protein | ||||
STRING | Bra009199.1-P | 2e-67 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 3e-33 | AGAMOUS-like 96 |