PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01934.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 498aa    MW: 54616.4 Da    PI: 7.213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01934.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.16.2e-35471951128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                              lp+G++F+Ptd+el+ e+L++kv  k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+ 
  Rsa1.0_01934.1_g00007.1  47 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKi 130
                              799************.99*****99995443233444334666646**********.555666799******************87 PP

                      NAM  78 .............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                             + +W++tgk+++v+  +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Rsa1.0_01934.1_g00007.1 131 qtecdnslhgsssSGETRWHKTGKTRPVML-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                              999999999987766788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3843214IPR003441NAC domain
PROSITE profilePS5100532.86647214IPR003441NAC domain
PfamPF023652.2E-1548195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPNWVGLPAG VKFDPTDQEL  60
IEHLEAKVLV KEMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNSLHG SSSSGETRWH KTGKTRPVML NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EREGELVVSK IFYQTQPRQC NWSSSTSSLN AIGGGGGGGE  240
ANSGGGGGEY NMRRDSGTTS GGSCSSSREI VNVNPTNRSD IVGGVGGGAM AVAAAAAAVV  300
AGLPSYSMDQ LSFVPFMKSF DEVSRRETLH TGQATCEDVM AEQLRHRHQA SPSSTSHHVA  360
HHQHHHQQQQ RYHAFNISQP THPISTIISP STSLHHAPIN ILDDNPYHVH RILLPNENYQ  420
AQQQQDHERD EQHNDGKMGG RSASGLEELI MGCSSSNTHH DVKDGSSSMG NQQEAEWLKY  480
SATFWPAPDS SGNQDHHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01934.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458188.10.0PREDICTED: uncharacterized protein LOC108829027 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0D3A3J10.0A0A0D3A3J1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7M20.0A0A3P6F7M2_BRAOL; Uncharacterized protein
STRINGBo1g016630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]