PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01910.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 580aa MW: 63306.4 Da PI: 8.4249

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01910.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50	5.8e-16	301	339	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YCeCfaag++C C+C dC+Nk Rsa1.0_01910.1_g00001.1 301 SCKRCNCKRSKCLKLYCECFAAGVYCIGPCSCVDCFNKP 339 689**********************************96 PP
2	TCR	51.6	1.8e-16	387	426	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN Rsa1.0_01910.1_g00001.1 387 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNAF 426 589***********************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.3E-18	300	341	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.598	301	427	IPR005172	CRC domain
Pfam	PF03638	9.9E-12	303	338	IPR005172	CRC domain
SMART	SM01114	9.9E-17	387	428	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.3E-12	389	425	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MDTPKKTATQ SENPVSKLKL ENSPVYNYIN SLSPIKPVRS LTFPQTIGSL SYSSPPSVFT 60 SPHASSHKGS RFKSDDTNSS KDVPASVGEE ALHETEPPQI QQNECTTIAT PPRVISDNET 120 DLLKMCDGNV KQKSEIPDWN AMILGYDDIL IDDPNNESEA SRCFLERSTE SKARLLSVTN 180 SDDALHRRVT KRCLDFEMPG NNKHMSVESS SRCVVANIGL HLSTIAVSSK DNSVGNDYSL 240 SGHSKVGLRG SISAVHNSQE TVKDNGQGLK EGAMSLALVE LNQSSPKKKR QVEQAGEAES 300 SCKRCNCKRS KCLKLYCECF AAGVYCIGPC SCVDCFNKPI HEDTVMSTRK QIESRNPLAF 360 APKVIGNSDS VVEIGDGNAS KTPASARHKR GCNCKKSNCL KKYCECYQSG VGCSINCRCE 420 GCKNAFGKKY GSSFTGVHIK QDKENETSER GRTEKQPSTP MPLRQPLAHL PISSNNILLP 480 HQHLHGASGS SLLKSQSFKR QDMSLLSHSN IETITEKKAD DIENLIQSPI TNMINNAVTP 540 NSKRVSPPHV GSSELSPCRR NGGRKLLLSV PTFPSLSPHH

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MDTPKKTATQ SENPVSKLKL ENSPVYNYIN SLSPIKPVRS LTFPQTIGSL SYSSPPSVFT  60
SPHASSHKGS RFKSDDTNSS KDVPASVGEE ALHETEPPQI QQNECTTIAT PPRVISDNET  120
DLLKMCDGNV KQKSEIPDWN AMILGYDDIL IDDPNNESEA SRCFLERSTE SKARLLSVTN  180
SDDALHRRVT KRCLDFEMPG NNKHMSVESS SRCVVANIGL HLSTIAVSSK DNSVGNDYSL  240
SGHSKVGLRG SISAVHNSQE TVKDNGQGLK EGAMSLALVE LNQSSPKKKR QVEQAGEAES  300
SCKRCNCKRS KCLKLYCECF AAGVYCIGPC SCVDCFNKPI HEDTVMSTRK QIESRNPLAF  360
APKVIGNSDS VVEIGDGNAS KTPASARHKR GCNCKKSNCL KKYCECYQSG VGCSINCRCE  420
GCKNAFGKKY GSSFTGVHIK QDKENETSER GRTEKQPSTP MPLRQPLAHL PISSNNILLP  480
HQHLHGASGS SLLKSQSFKR QDMSLLSHSN IETITEKKAD DIENLIQSPI TNMINNAVTP  540
NSKRVSPPHV GSSELSPCRR NGGRKLLLSV PTFPSLSPHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	303	424	12	120	Protein lin-54 homolog
5fd3_B	1e-17	303	424	12	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01910.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584927.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3
Refseq	XP_013695714.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A3P6EYZ9	0.0	A0A3P6EYZ9_BRAOL; Uncharacterized protein
STRING	Bo5g094510.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]