PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01889.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 409aa MW: 46766.5 Da PI: 6.279 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.9 | 2e-49 | 54 | 179 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg Rsa1.0_01889.1_g00002.1 54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATG 138 79***************************.89***************8778899******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ + s++ +++glkktL+fy+g+apkg++++W+m+eyrl Rsa1.0_01889.1_g00002.1 139 ADRMIRSETYRQIGLKKTLIFYSGKAPKGTRSSWIMNEYRL 179 ***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-55 | 53 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.246 | 53 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-24 | 55 | 179 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MTIVSSTTSI ITMMSNQVNN NTEKGIEEDA HRGGHESRVQ NDDEADDHDQ DMVMPGFRFH 60 PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA LAAIGEKEWY FYVPRDRKYR 120 NGDRPNRVTT SGYWKATGAD RMIRSETYRQ IGLKKTLIFY SGKAPKGTRS SWIMNEYRLP 180 HHDTEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRQHNH NSSSSSRLAV RQQQQYLPSS 240 SNHSDNNLNN NNNLEKHSTE YSGDGSTITT TNSNSDVTIA LANQNIYRPM PYGASNTTII 300 SNQEDDETAI VDDLQRLVNY QITDGGSNIN HQYYQIAEQF HNQQQLNANA NALQLVTADT 360 TATLTPQTQA ALAMNMIPTG TIPNNALWEM WNPLVPDGNK DHYTSNPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-56 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01889.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435193.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A078FN11 | 0.0 | A0A078FN11_BRANA; BnaC02g34540D protein | ||||
TrEMBL | A0A3P6DUV4 | 0.0 | A0A3P6DUV4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g136280.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 0.0 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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