PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01873.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 652aa MW: 73746.8 Da PI: 6.0363 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.5e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWk Rsa1.0_01873.1_g00001.1 14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWK 98 699***************************.99***************6448899999**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++++s k+ +g+kktLvfy+grap+ge+t+W+mheyr+ Rsa1.0_01873.1_g00001.1 99 ATGKDRTIKS-KKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141 **********.9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-64 | 5 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.702 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MTTETQATLS METLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP 60 GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV 120 FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQNPYVLCR LFHKPSDVAA NCDEVENVNA 180 TPTTTRCSRE DNNNSSDMFQ ETAASRVHAQ NISDDTERCP SDKGSDVKPD DDAPVIKTEK 240 SVDHAETSRA RDRVSGKSIV EESPFARDFS SLYGPSFAQT GDQTYTPATH SSVGFPASHM 300 DSMYSSDFGN CHYGLHFQDG AAIQDESLAD VLDEVFHNQS ASQGKDFALP KMMHWSFPRD 360 TFGFVNGGAT AEASSFPQFV PDVGASRLVS DHHYVDSKEA VEIQSSSGSS RTFTPLHSNV 420 LGQYPPVSYA TMDPFNSNVN QREQSSFEQQ LPVDRNISPN ELNARSRENQ TDLDLLVNQG 480 TAPRRIRLQI EQPFTPVNNE KERDVDNQEE DEVQSAMTKI VEENENSLLD KDKSRAPEHP 540 SLSESRTQGT AHRRIRLQTR IRKLPRAPNN TGRDSDHSEE VETHSKVEKE DVSASSSSSW 600 QKQKRLMRKR LVQCSGMVII MAVMVLLVGI WKESRDAKCS FLFQDSFRGM FT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01873.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738269 | 0.0 | KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485403.1 | 0.0 | PREDICTED: NAC domain-containing protein 14 | ||||
Swissprot | B5X570 | 0.0 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | A0A078JK12 | 0.0 | A0A078JK12_BRANA; BnaCnng49700D protein | ||||
TrEMBL | A0A0D3CGK8 | 0.0 | A0A0D3CGK8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g086780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 0.0 | NAC 014 |