PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01856.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 290aa    MW: 31711.2 Da    PI: 4.5961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01856.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2097146255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g
  Rsa1.0_01856.1_g00002.1  97 KYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 146
                              8********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3096154IPR001471AP2/ERF domain
PfamPF008475.7E-1397146IPR001471AP2/ERF domain
SMARTSM003802.2E-3897160IPR001471AP2/ERF domain
CDDcd000182.98E-3397153No hitNo description
PROSITE profilePS5103223.86897154IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2297154IPR016177DNA-binding domain
PRINTSPR003671.4E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.4E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
METDKKVLKS MSTTTITQPR ILRISVSDPY ATDSSSDEDE GFSEISGKRR RVKKFVNEVV  60
LESTVPDKDR PKKKKRPNMN TNAKTTAETA VTAPARKYRG VRQRPWGKWA AEIRDPSRRV  120
RLWLGTYDTA EEAAIVYDNA AIQLRGPNAL TNFSPPPPAT ENGEEASKVS DGECLGSPVS  180
VLQTPFSGES TAAITVKEEF YGVSTTTAAV EVKEEPSITV SDTFTDFSSP LFLDDDVFGF  240
STSMPDCFGD GVFADMSFGF GSGSGFSSWH VEDHFQDIGD LFGSDPLLTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2193164170ATERF1
3gcc_A5e-2193164170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14751KRRRV
26874DRPKKKK
37076PKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01856.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474731.10.0PREDICTED: ethylene-responsive transcription factor CRF1
SwissprotO825031e-107CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-154A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBo3g045150.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-101cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]