PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01811.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 500aa MW: 56390.3 Da PI: 7.3038 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 82.7 | 6e-26 | 334 | 393 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++kl+++srkpy h+SRh hAlrRpR sgGrF Rsa1.0_01811.1_g00005.1 334 GTIYVNSKQYHGIIRRRQSRAKAAAvldHNKLTSRSRKPYKHHSRHLHALRRPRRSGGRF 393 689*********************99999******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54001 | 8.93E-13 | 13 | 132 | No hit | No description |
PROSITE profile | PS50802 | 9.102 | 14 | 134 | IPR003323 | OTU domain |
Pfam | PF02338 | 2.0E-5 | 21 | 95 | IPR003323 | OTU domain |
SMART | SM00521 | 2.3E-26 | 331 | 396 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.542 | 332 | 396 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.8E-19 | 335 | 357 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.3E-22 | 335 | 393 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.8E-19 | 370 | 393 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MTKKHEIRSY NDGFEIIPIP KDGNCMFSVL SHQITSNLDH QREYRRMIGS PEHVHVPVAV 60 GDPYQHYCDY MRIDGHWGRH TELFAASHIF GCRVVHRRDT ATNILDPPNA DDETPEIHLL 120 YDLFGGHYES LQTSSQPKEE KMVYENKFNN SLNLRGVGLS DQCQEESVLK IGRTEEASQT 180 EESAEVQEIA ESSQIAEKKK QKRSPEAENS PLVRSHIPWW NGFGSQPLAP VSLAGDADSF 240 HIGPAGETEH GVDKQSNSAS PLAFSLGVKS SIDVLKPRAA AFSLQPPCLE LGFCQPQIYT 300 KYPCAQQEHY GVAVSAYGSQ SRVMLPLNME TEDGTIYVNS KQYHGIIRRR QSRAKAAAVL 360 DHNKLTSRSR KPYKHHSRHL HALRRPRRSG GRFLNTKGKK ADETKQTHPQ PQQSNSQSSE 420 VLHPEREIMN LSNGLNVSGE EVTSINHFLS SSVHPLGDGM VMPSKWSEAA AVEWLLQFQY 480 LIFLYLCFPV KRREMENSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-13 | 336 | 396 | 5 | 62 | HAPB protein |
4g92_A | 5e-13 | 336 | 396 | 5 | 62 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01811.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189193 | 9e-63 | AC189193.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003A10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696108.1 | 1e-142 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 1e-124 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A3P5ZNG6 | 1e-127 | A0A3P5ZNG6_BRACM; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__563__AT3G05690.1 | 1e-124 | (Arabidopsis lyrata) | ||||
STRING | XP_006408040.1 | 1e-124 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-118 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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