PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01745.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 316aa    MW: 36433.2 Da    PI: 5.1831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01745.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-081559345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+  d+++  a + + ++   +W  +ar +g g++++++k ++ 
  Rsa1.0_01745.1_g00004.1 15 SWTAKQDKQFEVALATYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 59
                             7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6741166IPR017884SANT domain
SMARTSM007171.1E-81264IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-111469IPR009057Homeodomain-like
PfamPF002491.6E-61558IPR001005SANT/Myb domain
CDDcd001674.06E-61662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTAKQ DKQFEVALAT YDKDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPQPRLRE VLPQIITENQ YSFVKGQLME NVLLASELVK NYHKEKVSPR  120
LGVVMGFPKP SQYKSMENFQ DIFKAAEDLD RDAHYHLIYL SCDLPVKYLG LPLLTKGMKK  180
KDYLPLTEKI RARITTWTSC YISYAAYLED VGEEITVGYM DFQEFAQETE FMGDLLGDGG  240
AIDLGISRFA TVYEEMYNPR RSKKHGSNLL NEIESELDIL RGNQSIEMED TDLWKRVSGY  300
KDVFSTHETW KLLREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-24679174RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01745.1_g00004.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.13e-33RAD-like 4