PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01743.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28860.5 Da PI: 9.1817 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Rsa1.0_01743.1_g00007.1 10 KGPWTEQEDIILVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.7e-18 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Rsa1.0_01743.1_g00007.1 63 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.094 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.75E-30 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 27.414 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNMMQEENRK GPWTEQEDII LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KTQEKKRHVS 120 PSSSCSNCCS SSMTTTNTQD VSFQSSGKVS FYDTGGNREM NQETKDGYSM DDIWKEIDHS 180 AVKVTQPVKD IYLEQSYCLS YPTLASPSWE SSLDSVWKMD ADKSKMSSFA DDQFPFCFQH 240 SRSPWSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-27 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-27 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-28 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-28 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01743.1_g00007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966738 | 0.0 | KC966738.1 Brassica napus MYB transcription factor 48 (MYB48.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436504.1 | 0.0 | PREDICTED: transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 1e-145 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A0D3BHG5 | 1e-165 | A0A0D3BHG5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BGL9 | 1e-165 | A0A3P6BGL9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g130340.1 | 1e-166 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-145 | myb domain protein 48 |
Publications ? help Back to Top | |||
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