PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01736.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 269aa MW: 29918.9 Da PI: 6.9148

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01736.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.9	3.1e-12	26	99	16	95
EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 16 lvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +p f+ +h +g+ e kt +l++ s + vk+ ++ + lt+GWkeF+ a++L+ gD+++F+++g++ f +v+ Rsa1.0_01736.1_g00005.1 26 VNIPVAFFVKHvQGSYEHIKTAKLRTdASDHTLLVKV--DGMK----LTDGWKEFAVAHDLRIGDILIFRHEGDMVF--HVT 99 679**999994444555677777658889999999..5555....*********************9999988..666 PP
2	B3	60.4	3.2e-19	147	238	4	96
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++++ k++ l+lp + + ++ + k++ ++++l +e+g+sW+v +++ ++g y++t+GWk+F +n+ k gD+++F ++g+ Rsa1.0_01736.1_g00005.1 147 AEVTASNKKEDKLYLPLEAT-SCtALYKHC-QEMILVNEDGKSWKVSSRFSESGGNYYITRGWKKFTVDNRCKIGDVILFNVVGDG 230 5678999999******98.554777766.5**************************************************98 PP EE..EEEE CS B3 89 efelvvkv 96 e+++++ v Rsa1.0_01736.1_g00005.1 231 ETTPLLCV 238 88888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-17	8	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-19	8	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.10E-14	12	101	No hit	No description
SMART	SM01019	4.2E-16	14	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-7	27	96	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.404	67	104	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.7E-17	140	243	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.83E-18	143	233	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-15	144	242	No hit	No description
PROSITE profile	PS50863	13.592	144	242	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-14	145	242	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-18	147	238	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MAAHIVQSPT TPHFFQPLLP GYETHVNIPV AFFVKHVQGS YEHIKTAKLR TDASDHTLLV 60 KVDGMKLTDG WKEFAVAHDL RIGDILIFRH EGDMVFHVTP FGPSCCDIQY TAPSSHDINN 120 ESHDLTTHNT GGPGAISSIT FEYCFLAEVT ASNKKEDKLY LPLEATSCTA LYKHCQEMIL 180 VNEDGKSWKV SSRFSESGGN YYITRGWKKF TVDNRCKIGD VILFNVVGDG ETTPLLCVYL 240 ERKADSQILG KHKHLTRKSG DISSGSGIN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01736.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462650.1	0.0	PREDICTED: B3 domain-containing protein REM7-like
TrEMBL	A0A397XK02	1e-105	A0A397XK02_BRACM; Uncharacterized protein (Fragment)
STRING	Bra022287.1-P	1e-103	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-66	B3 family protein