PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01729.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 174aa    MW: 18768 Da    PI: 4.7465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01729.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-171564355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             ykGVr++k++ +Wv+eIr p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Rsa1.0_01729.1_g00005.1 15 YKGVRQRKNSDKWVSEIRAPR----KpNRIWLGTFTTPEMAAIAYDVAALALKG 64
                             9******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-191474IPR016177DNA-binding domain
SMARTSM003801.2E-271478IPR001471AP2/ERF domain
PROSITE profilePS5103220.5741472IPR001471AP2/ERF domain
PfamPF008478.1E-111564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-261574IPR001471AP2/ERF domain
CDDcd000183.20E-261574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSGTSKENSG RHHLYKGVRQ RKNSDKWVSE IRAPRKPNRI WLGTFTTPEM AAIAYDVAAL  60
ALKGTQSGLN FPNSASALPA PASMSPGDIQ AAAASAAAAF GAARDASVER SNVMMNGSYE  120
NTNGFIDEDL IFDMPNVLMD MAEGMLLSPP RQPTVDASEA DYYTGADDYL WNFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01729.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-104AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-104AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-104CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-104DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-104DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438178.11e-126PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-77ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D3BRI73e-95A0A0D3BRI7_BRAOL; Uncharacterized protein
STRINGBo4g034600.16e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-58ERF family protein