PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01680.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 339aa    MW: 39156.7 Da    PI: 6.943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01680.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-14130175248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              g W + Ed  l  +v+++G+++Wk Ia ++g +R +kqc++rw+++l
  Rsa1.0_01680.1_g00002.1 130 GGWDQTEDINLRILVELYGTKNWKQIATMLG-TRIGKQCRERWHNHL 175
                              67*****************************.*************97 PP
2Myb_DNA-binding50.54.8e-16181223145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              +++WT+ Ed++lv+a+k +G++ W++Ia ++  gRt++ +k+rw+
  Rsa1.0_01680.1_g00002.1 181 KNAWTEKEDQILVEAHKAFGNK-WTKIALKLH-GRTENAIKNRWN 223
                              689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.692124179IPR017930Myb domain
SuperFamilySSF466895.99E-27128222IPR009057Homeodomain-like
SMARTSM007172.9E-11128177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-19131180IPR009057Homeodomain-like
CDDcd001671.13E-11132175No hitNo description
PfamPF139211.3E-14132189No hitNo description
PROSITE profilePS5129419.426180230IPR017930Myb domain
SMARTSM007174.2E-15180228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-20181228IPR009057Homeodomain-like
CDDcd001672.98E-11183226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDYSLNIFNK NFTRNETGNS LPSDDLSYLK KDHINCFNDY LGQSSVNGWS NSSIMTSNSD  60
PNYQSPISVM PNQNYDPFSR SFVFTQNFPA FNSLIPEIPP RYPFIDIDLE KNNKVAKRNK  120
ALTENNFNTG GWDQTEDINL RILVELYGTK NWKQIATMLG TRIGKQCRER WHNHLRHGIK  180
KNAWTEKEDQ ILVEAHKAFG NKWTKIALKL HGRTENAIKN RWNATKRRMH FMKMKQSDKN  240
ANPPQNVILA GYIRHVTNKN ESPNTKETDC TKNDDYDNAF DGEMDLSLGV TTQNTEPLAS  300
MSTTSCYVPE PATTFSWDDY ITNVCESKDD FDMIMQGWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321302288106B-MYB
1mse_C2e-321302285103C-Myb DNA-Binding Domain
1msf_C2e-321302285103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01680.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.20.0transcription factor MYB115-like
SwissprotQ1PDP91e-52MY115_ARATH; Transcription factor MYB115
TrEMBLA0A3P6CMW60.0A0A3P6CMW6_BRAOL; Uncharacterized protein
STRINGBo4g140150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.14e-55myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]